Metadata-Version: 1.1
Name: GenomeBaser
Version: 0.1.2
Summary: GenomeBaser manages complete (bacterial) genomes from NCBI
Home-page: http://github.com/mscook/GenomeBaser
Author: Mitchell Stanton-Cook
Author-email: m.stantoncook@gmail.com
License: ECL 2.0
Description: GenomeBaser
        ===========
        
        A tool to manage complete (bacterial) genomes from the NCBI.
        
        Most current release is 0.1.2_.
        
        
        Why?
        ----
        
        GenomeBaser:
            1) Encourages best practice (uses rsync -> only update what's needed)
            2) Despises filenames that aren't easily understandable (symlinks to 
               RefSeq based filename to  Genus_species_strain.gbk)
            3) Give you what you will probably wan't in the future (provides both .gbk 
               and .fna. Generate PROKKA databases)
            4) Understands important differences (partitions complete chomosome and 
               complete plasmind into separate buckets)
        
        
        Installation
        ------------
        
        Something like::
        
            $ pip install GenomeBaser
        
        Alternatively::
        
            $ wget https://github.com/mscook/GenomeBaser/archive/v0.1.2.tar.gz
            $ tar -zxvf v0.1.2.tar.gz
            $ cd v0.1.2
            $ # May need sudo/root, BUT...
            $ python setup.py install
        
        
        Usage
        -----
        
        Something like::
        
            $ GenomeBaser --help
                Usage: GenomeBaser [OPTIONS] GENUS SPECIES OUT_DATABASE_LOCATION
        
                GenomeBaser is tool to manage complete (bacterial) genomes from the NCBI.
        
                Example usage:
        
                      $ GenomeBaser.py Klebsiella pneumoniae ~/dbs
        
                      $ # (wait a few months)...
        
                      $ GenomeBaser Klebsiella pneumoniae ~/dbs
        
                By Mitchell Stanton-Cook (m.stantoncook@gmail.com)
        
                **More info at:** https://github.com/mscook/GenomeBaser
        
                Options:
                  --check_deps / --no-check_deps  Check that non-python dependencies exist
                  --help                          Show this message and exit.
        
        
        
        .. _0.1.2: https://github.com/mscook/GenomeBaser/archive/v0.1.2.tar.gz
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved
Classifier: Natural Language :: English
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 2 :: Only
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
