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examples/GNMExample.py
examples/README.txt
examples/amber2dcd.py
examples/backbone_dihedral.py
examples/blocks.py
examples/dcd2xtc.py
examples/lipid_order_parameters.py
examples/make_MthK_tetramer.py
examples/membrane-composition.py
examples/membrane-leaflets.py
examples/membrane-parameters.py
examples/multimers-analysis.py
examples/nativecontacts.py
examples/pdb2charmm.py
examples/potential_profile.py
examples/radial_distribution_function.py
examples/rmsd.py
examples/rmsfit.py
examples/rmsfit_qcp.py
examples/rotational_autocorrelation.py
examples/schlitter_determ.py
examples/schlitter_quasiharmonic.py
examples/data/3ldd.pdb
examples/figures/adk_saltbridge_contact_analysis1.pdf
examples/figures/adk_saltbridge_contact_analysis1_matrix.pdf
examples/figures/backbone_dihedrals_ramachandran.pdf
examples/figures/backbone_dihedrals_ramachandran.png
examples/figures/backbone_dihedrals_residue.pdf
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examples/figures/blocks.pdf
examples/figures/blocks.png
examples/figures/nativecontacts.pdf
examples/figures/nativecontacts.png
examples/figures/rdf.pdf
examples/figures/rdf.png
examples/figures/rmsd.pdf
examples/figures/rmsd.png
examples/figures/rmsdfit_rmsd.pdf
examples/figures/rmsdfit_rmsd.png
examples/output/adk_dims_first.pdb
examples/output/adk_dims_last.pdb
examples/output/adk_dims_q1q2.dat.bz2
examples/output/rdf.dat
examples/output/rmsfit_rmsd.dat
src/KDTree/KDTree.cpp
src/KDTree/KDTree.h
src/KDTree/KDTree.i
src/KDTree/KDTree.swig.cpp
src/KDTree/Makefile.example
src/KDTree/README
src/dcd/c_numpy.pxd
src/dcd/dcd.c
src/dcd/dcdtimeseries.c
src/dcd/dcdtimeseries.pyx
src/dcd/include/correl.h
src/dcd/include/endianswap.h
src/dcd/include/fastio.h
src/dcd/include/readdcd.h
src/numtools/c_numpy.pxd
src/numtools/calc_distances.h
src/numtools/clapack.h
src/numtools/distances.c
src/numtools/distances.pyx
src/numtools/rms_fitting.pyx
src/pyqcprot/LICENSE
src/pyqcprot/README
src/pyqcprot/example_py
src/pyqcprot/mdanalysis_example_py
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src/xdrfile/NEWS
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src/xdrfile/xdrfile_xtc.c
src/xdrfile/xdrfile_xtc.h