Metadata-Version: 1.0
Name: MetaChecka2000
Version: 0.1.0
Summary: MetaChecka2000
Home-page: http://pypi.python.org/pypi/MetaChecka2000/
Author: Michael Imelfort
Author-email: mike@mikeimelfort.com
License: GPL3
Description: .                                                                             
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        Overview
        =========
        
        MetaChecka is a metagenomic QA toolset. It uses sets of reference
        genes to test for bin completeness and contamination
        
        Installation
        =========
        
        Should be as simple as
        
            pip install MetaChecka2000
        
        Data preparation and running MetaChecka2000
        =========
        
        MetaChecka2000 expects to see a folder containing one or more multiple fasta 
        files containg assembled and binned contigs, one file for each bin.
        
        You need to:
        
          1. Extract genes from the contigs
          2. Use hmmer to match these genes to an existing database
          3. Do some counting
        
        Use: metachecka2000 -h for more detailed help
        
        Licence and referencing
        =========
        
        Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/MetaChecka2000
        
        This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.
        
        Copyright © 2012 Michael Imelfort, Connor Skennerton. See LICENSE.txt for further details.
        
Platform: UNKNOWN
