LICENSE.txt
MANIFEST.in
README.txt
TRAINING.txt
setup.py
MicrobeCensus.egg-info/PKG-INFO
MicrobeCensus.egg-info/SOURCES.txt
MicrobeCensus.egg-info/dependency_links.txt
MicrobeCensus.egg-info/requires.txt
MicrobeCensus.egg-info/top_level.txt
bin/prerapsearch_Linux_2.15
bin/rapsearch_Darwin_2.15
bin/rapsearch_Linux_2.15
data/coefficients.map
data/frag_bias.txt
data/gc_bias.txt
data/gene_fam.map
data/gene_len.map
data/pars.map
data/rapdb_2.15
data/rapdb_2.15.info
data/read_len.map
data/weights.map
example/example.fa.gz
example/example.fa.out
example/example.fq.gz
example/example.fq.out
src/ags_functions.py
src/class_reads.py
src/microbe_census.py
src/optimize_parameters.py
src/optimize_weights.R
src/search_reads.py
src/seq_sim.py
src/sim_functions.py
src/sim_reads.py
src/test.py
src/training_functions.py
test/TEST.txt
test/estimated_ags.txt
test/mock_community.txt
test/sim_metagenome.fa.gz
test/true_ags.txt
training/input/gene_fams/BA00001.faa.gz
training/input/gene_fams/BA00003.faa.gz
training/input/gene_fams/BA00005.faa.gz
training/input/gene_fams/BA00007.faa.gz
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training/input/gene_fams/BA00015.faa.gz
training/input/gene_fams/BA00016.faa.gz
training/input/gene_fams/BA00017.faa.gz
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training/input/gene_fams/BA00019.faa.gz
training/input/gene_fams/BA00020.faa.gz
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training/input/gene_fams/BA00036.faa.gz
training/input/gene_fams/BA00037.faa.gz
training/input/gene_fams/BA00040.faa.gz
training/input/genomes/2504643012.fna.gz
training/input/genomes/2504756006.fna.gz
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