Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

C

c (in PyDSTool.Interval')	CLIP (in PyDSTool.Toolbox.DSSRT_tools)	contained (in PyDSTool.Interval')
c (in PyDSTool.Symbolic)	CLIP (in PyDSTool.Toolbox.InputProfile)	contained (in PyDSTool.Toolbox.NineML)
c_ (in PyDSTool.PyCont.ContClass')	CLIP (in PyDSTool.Toolbox.ModelHelper)	contained (in PyDSTool.Toolbox.phaseplane)
c_ (in PyDSTool.PyCont.Continuation)	CLIP (in PyDSTool.Toolbox.NineML)	contained (in PyDSTool.Toolbox.synthetic_data)
c_ (in PyDSTool.PyCont.misc)	CLIP (in PyDSTool.Toolbox.adjointPRC)	contained (in PyDSTool.Toolbox.syntheticdata)
c_ (in PyDSTool.Toolbox.ActivationFuncs)	CLIP (in PyDSTool.Toolbox.fracdim)	contained (in PyDSTool.Trajectory')
c_ (in PyDSTool.Toolbox.DSSRT_tools)	CLIP (in PyDSTool.Toolbox.makeSloppyModel)	contained (in PyDSTool.Variable')
c_ (in PyDSTool.Toolbox.InputProfile)	CLIP (in PyDSTool.Toolbox.neuralcomp)	contains() (in Event)
c_ (in PyDSTool.Toolbox.ModelHelper)	CLIP (in PyDSTool.Toolbox.phaseplane)	contains() (in Generator)
c_ (in PyDSTool.Toolbox.NineML)	CLIP (in PyDSTool.Toolbox.synthetic_data)	contains() (in Interval)
c_ (in PyDSTool.Toolbox.adjointPRC)	CLIP (in PyDSTool.Toolbox.syntheticdata)	ContClass (in PyDSTool.PyCont.ContClass')
c_ (in PyDSTool.Toolbox.fracdim)	CLOSE (in PyDSTool.Toolbox.dssrt)	ContClass' (in PyDSTool.PyCont)
c_ (in PyDSTool.Toolbox.makeSloppyModel)	closest_perp_distance_between_sample_points() (in PyDSTool.Toolbox.phaseplane)	context (in PyDSTool.MProject)
c_ (in PyDSTool.Toolbox.neuralcomp)	closest_perp_distance_between_splines() (in PyDSTool.Toolbox.phaseplane)	Continuation (in PyDSTool.PyCont)
c_ (in PyDSTool.Toolbox.phaseplane)	closest_perp_distance_on_spline() (in PyDSTool.Toolbox.phaseplane)	Continuation (in PyDSTool.PyCont.Continuation)
c_ (in PyDSTool.Toolbox.synthetic_data)	collate_results() (in condition)	Continue() (in dopri)
c_ (in PyDSTool.Toolbox.syntheticdata)	collect_numbers() (in PyDSTool.parseUtils)	Continue() (in radau)
c_ (in PyDSTool)	collectReused() (in PyDSTool.Events)	Continue() (in integrator)
calc_epochs() (in domscales)	colorbar_doc (in PyDSTool.PyCont.ContClass')	Continuous (in PyDSTool.FuncSpec')
calc_fast_slow() (in domscales)	colorbar_doc (in PyDSTool.PyCont.Continuation)	Continuous (in PyDSTool.Generator.ADMC_ODEsystem')
calc_inf() (in dssrt_assistant)	colorbar_doc (in PyDSTool.PyCont.Plotting)	Continuous (in PyDSTool.Generator.Dopri_ODEsystem')
calc_Is() (in dssrt_assistant)	colorbar_doc (in PyDSTool.PyCont.misc)	Continuous (in PyDSTool.Generator.EmbeddedSysGen')
calc_psi() (in dssrt_assistant)	colorbar_doc (in PyDSTool.Toolbox.data_analysis)	Continuous (in PyDSTool.Generator.Euler_ODEsystem')
calc_psis() (in dssrt_assistant)	colormap() (in PyDSTool.Toolbox.data_analysis)	Continuous (in PyDSTool.Generator.ExplicitFnGen')
calc_rankings() (in dssrt_assistant)	commit() (in GenTransform)	Continuous (in PyDSTool.Generator.ExtrapolateTable')
calc_regimes() (in domscales)	commit() (in ModelTransform)	Continuous (in PyDSTool.Generator.ImplicitFnGen')
calc_tau() (in dssrt_assistant)	commit_gentrans() (in ModelTransform)	Continuous (in PyDSTool.Generator.InterpolateTable')
calc_taus_infs() (in dssrt_assistant)	commit_trans() (in ModelManager)	Continuous (in PyDSTool.Generator.LookupTable')
cartesianProduct() (in PyDSTool.utils)	common (in PyDSTool)	Continuous (in PyDSTool.Generator.MapSystem')
cast (in PyDSTool.Toolbox.ActivationFuncs)	comp_seqs() (in PyDSTool.Toolbox.dssrt)	Continuous (in PyDSTool.Generator.ODEsystem')
cast (in PyDSTool.Toolbox.DSSRT_tools)	compare_data_from_events() (in PyDSTool.Toolbox.ParamEst)	Continuous (in PyDSTool.Generator.Radau_ODEsystem')
cast (in PyDSTool.Toolbox.InputProfile)	compare_pert() (in PyDSTool.Toolbox.PRCtools)	Continuous (in PyDSTool.Generator.Vode_ODEsystem')
cast (in PyDSTool.Toolbox.ModelHelper)	compareBaseClass() (in PyDSTool.common)	Continuous (in PyDSTool.Interval')
cast (in PyDSTool.Toolbox.NineML)	compareClassAndBases() (in PyDSTool.common)	Continuous (in PyDSTool.ModelConstructor')
cast (in PyDSTool.Toolbox.adjointPRC)	compareList() (in PyDSTool.utils)	Continuous (in PyDSTool.ModelSpec')
cast (in PyDSTool.Toolbox.fracdim)	compareNumTypes() (in PyDSTool.common)	Continuous (in PyDSTool.Symbolic)
cast (in PyDSTool.Toolbox.makeSloppyModel)	comparePointCoords() (in PyDSTool.Points)	Continuous (in PyDSTool.Toolbox.NineML)
cast (in PyDSTool.Toolbox.neuralcomp)	compartment (in PyDSTool.Toolbox.neuralcomp)	Continuous (in PyDSTool.Toolbox.event_driven_simulator)
cast (in PyDSTool.Toolbox.phaseplane)	compatGens (in PyDSTool.Toolbox.neuralcomp)	Continuous (in PyDSTool.Toolbox.phaseplane)
cast (in PyDSTool.Toolbox.synthetic_data)	compatible_formats (in PyDSTool.fixedpickle)	Continuous (in PyDSTool.Toolbox.synthetic_data)
cast (in PyDSTool.Toolbox.syntheticdata)	compatible_formats (in cPickle)	Continuous (in PyDSTool.Toolbox.syntheticdata)
cast (in PyDSTool)	compatibleContainers (in Component)	Continuous (in PyDSTool.Trajectory')
Ceil (in PyDSTool)	compatibleContainers (in LeafComponent)	Continuous (in PyDSTool.Variable')
Ceil (in PyDSTool.ModelSpec')	compatibleContainers (in ModelSpec)	Continuous (in PyDSTool.common)
Ceil (in PyDSTool.Symbolic)	compatibleContainers (in channel)	Continuous (in PyDSTool.parseUtils)
ceil (in PyDSTool.Symbolic)	compatibleContainers (in neuron)	Continuous (in PyDSTool.utils)
Ceil (in PyDSTool.Toolbox.ActivationFuncs)	compatibleContainers (in soma)	Converged (in PyDSTool.Toolbox.ParamEst)
Ceil (in PyDSTool.Toolbox.DSSRT_tools)	compatibleContainers (in synapse)	convert_power_reserved_keywords (in PyDSTool.parseUtils)
Ceil (in PyDSTool.Toolbox.InputProfile)	compatibleGens (in ModelSpec)	convert_ptlabel_events() (in PyDSTool.Trajectory')
Ceil (in PyDSTool.Toolbox.ModelHelper)	compatibleGens (in Quantity)	convertComponent() (in GenTransform)
Ceil (in PyDSTool.Toolbox.NineML)	compatibleGens (in NineMLModel)	convertPowers() (in PyDSTool.parseUtils)
ceil (in PyDSTool.Toolbox.NineML)	compatibleGens (in sloppyModel)	convertQuantity() (in GenTransform)
Ceil (in PyDSTool.Toolbox.adjointPRC)	compatibleGens (in compatODEComponent)	cool (in PyDSTool.Toolbox.FR)
Ceil (in PyDSTool.Toolbox.fracdim)	compatibleGens (in compatODELeafComponent)	cool_simple() (in PyDSTool.Toolbox.FR)
Ceil (in PyDSTool.Toolbox.makeSloppyModel)	compatibleSubcomponents (in Component)	copy() (in args)
Ceil (in PyDSTool.Toolbox.neuralcomp)	compatibleSubcomponents (in LeafComponent)	copy() (in symbolMapClass)
Ceil (in PyDSTool.Toolbox.phaseplane)	compatibleSubcomponents (in ModelSpec)	copyright (in PyDSTool.conf)
ceil (in PyDSTool.Toolbox.phaseplane)	compatibleSubcomponents (in compartment)	copysign (in PyDSTool.Toolbox.ActivationFuncs)
Ceil (in PyDSTool.Toolbox.synthetic_data)	compatibleSubcomponents (in network)	copysign (in PyDSTool.Toolbox.DSSRT_tools)
ceil (in PyDSTool.Toolbox.synthetic_data)	compatibleSubcomponents (in neuron)	copysign (in PyDSTool.Toolbox.InputProfile)
Ceil (in PyDSTool.Toolbox.syntheticdata)	compatibleSubcomponents (in pnnetwork)	copysign (in PyDSTool.Toolbox.ModelHelper)
ceil (in PyDSTool.Toolbox.syntheticdata)	compatODEComponent (in PyDSTool.Toolbox.neuralcomp)	copysign (in PyDSTool.Toolbox.NineML)
CenteredFiniteDifferences (in PyDSTool.Toolbox.optimizers.helpers.finite_difference)	compatODELeafComponent (in PyDSTool.Toolbox.neuralcomp)	copysign (in PyDSTool.Toolbox.adjointPRC)
CFGorder (in PyDSTool.Toolbox.DSSRT_tools)	compile_next_state() (in simulator)	copysign (in PyDSTool.Toolbox.fracdim)
change_bgd() (in KeyEvent)	compileAutoLib() (in ContClass)	copysign (in PyDSTool.Toolbox.makeSloppyModel)
change_curr() (in KeyEvent)	compileFuncSpec() (in Component)	copysign (in PyDSTool.Toolbox.neuralcomp)
change_fgd() (in KeyEvent)	compileFuncSpec() (in LeafComponent)	copysign (in PyDSTool.Toolbox.phaseplane)
changeDomain() (in GenTransform)	compileFuncSpec() (in ModelSpec)	copysign (in PyDSTool.Toolbox.synthetic_data)
changeTargetGen() (in GenTransform)	compileFuncSpec() (in Quantity)	copysign (in PyDSTool.Toolbox.syntheticdata)
channel (in PyDSTool.Toolbox.neuralcomp)	compileLib() (in Dopri_ODEsystem)	copysign (in PyDSTool)
channel_off (in PyDSTool.Toolbox.neuralcomp)	compileLib() (in Radau_ODEsystem)	copyVarDict() (in PyDSTool.common)
channel_on (in PyDSTool.Toolbox.neuralcomp)	Component (in PyDSTool.ModelSpec')	corr_dim() (in PyDSTool.Toolbox.fracdim)
check() (in genDBClass)	composed_map1D (in PyDSTool.Toolbox.event_driven_simulator)	corr_dim_with_progress() (in PyDSTool.Toolbox.fracdim)
check_arguments() (in Optimizer)	composite_criteria (in PyDSTool.Toolbox.optimizers.criterion)	Cos (in PyDSTool)
check_bounds() (in PyDSTool.Toolbox.phaseplane)	compute() (in Dopri_ODEsystem)	Cos (in PyDSTool.ModelSpec')
check_damped_gradient_relative() (in test_Quadratic)	compute() (in EmbeddedSysGen)	Cos (in PyDSTool.Symbolic)
check_opts() (in PyDSTool.Toolbox.dssrt)	compute() (in Euler_ODEsystem)	cos (in PyDSTool.Symbolic)
check_simple_gradient() (in test_Quadratic)	compute() (in ExplicitFnGen)	Cos (in PyDSTool.Toolbox.ActivationFuncs)
check_simple_gradient_monotony() (in test_Rosenbrock)	compute() (in ExtrapolateTable)	Cos (in PyDSTool.Toolbox.DSSRT_tools)
check_simple_gradient_relative() (in test_Rosenbrock)	compute() (in ImplicitFnGen)	Cos (in PyDSTool.Toolbox.InputProfile)
check_simple_marquardt() (in test_Quadratic)	compute() (in InterpolateTable)	Cos (in PyDSTool.Toolbox.ModelHelper)
check_simple_newton() (in test_Powell)	compute() (in LookupTable)	Cos (in PyDSTool.Toolbox.NineML)
check_simple_newton() (in test_Quadratic)	compute() (in MapSystem)	cos (in PyDSTool.Toolbox.NineML)
check_simple_newton_relative() (in test_Rosenbrock)	compute() (in ODEsystem)	Cos (in PyDSTool.Toolbox.adjointPRC)
check_swp_cwgradient_relative() (in test_Quadratic)	compute() (in Radau_ODEsystem)	Cos (in PyDSTool.Toolbox.fracdim)
check_swp_dpgradient_relative() (in test_Quadratic)	compute() (in Vode_ODEsystem)	Cos (in PyDSTool.Toolbox.makeSloppyModel)
check_swp_dypgradient_relative() (in test_Quadratic)	compute() (in HybridModel)	Cos (in PyDSTool.Toolbox.neuralcomp)
check_swp_frgradient_relative() (in test_Quadratic)	compute() (in NonHybridModel)	Cos (in PyDSTool.Toolbox.phaseplane)
check_swp_prpgradient_relative() (in test_Quadratic)	compute_traj() (in intModelInterface)	cos (in PyDSTool.Toolbox.phaseplane)
check_swpr_dygradient() (in test_Rosenbrock)	computeEigen() (in ContClass)	Cos (in PyDSTool.Toolbox.synthetic_data)
check_wpr_cwgradient() (in test_Rosenbrock)	computeEigen() (in Continuation)	cos (in PyDSTool.Toolbox.synthetic_data)
checkArgs() (in Generator)	computeFibonacci() (in FibonacciSectionSearch)	Cos (in PyDSTool.Toolbox.syntheticdata)
checkBasic() (in integrator)	concatStrDict() (in PyDSTool.common)	cos (in PyDSTool.Toolbox.syntheticdata)
checkbraces() (in PyDSTool.Symbolic)	concavity() (in nullcline)	Cosh (in PyDSTool)
checkEvents() (in integrator)	concavity_at_sample_points() (in nullcline)	Cosh (in PyDSTool.ModelSpec')
checkExtInputs() (in integrator)	condition (in PyDSTool.MProject)	Cosh (in PyDSTool.Symbolic)
CheckHopf() (in PyDSTool.PyCont.misc)	conf (in PyDSTool)	cosh (in PyDSTool.Symbolic)
checkInitialConditions() (in MapSystem)	conj (in PyDSTool.Toolbox.ActivationFuncs)	Cosh (in PyDSTool.Toolbox.ActivationFuncs)
checkInitialConditions() (in ODEsystem)	conj (in PyDSTool.Toolbox.DSSRT_tools)	Cosh (in PyDSTool.Toolbox.DSSRT_tools)
checkInteg() (in integrator)	conj (in PyDSTool.Toolbox.InputProfile)	Cosh (in PyDSTool.Toolbox.InputProfile)
checkRunParams() (in integrator)	conj (in PyDSTool.Toolbox.ModelHelper)	Cosh (in PyDSTool.Toolbox.ModelHelper)
Choice (in PyDSTool)	conj (in PyDSTool.Toolbox.NineML)	Cosh (in PyDSTool.Toolbox.NineML)
Choice (in PyDSTool.ModelSpec')	conj (in PyDSTool.Toolbox.adjointPRC)	cosh (in PyDSTool.Toolbox.NineML)
Choice (in PyDSTool.Symbolic)	conj (in PyDSTool.Toolbox.fracdim)	Cosh (in PyDSTool.Toolbox.adjointPRC)
Choice (in PyDSTool.Toolbox.ActivationFuncs)	conj (in PyDSTool.Toolbox.makeSloppyModel)	Cosh (in PyDSTool.Toolbox.fracdim)
Choice (in PyDSTool.Toolbox.DSSRT_tools)	conj (in PyDSTool.Toolbox.neuralcomp)	Cosh (in PyDSTool.Toolbox.makeSloppyModel)
Choice (in PyDSTool.Toolbox.InputProfile)	conj (in PyDSTool.Toolbox.phaseplane)	Cosh (in PyDSTool.Toolbox.neuralcomp)
Choice (in PyDSTool.Toolbox.ModelHelper)	conj (in PyDSTool.Toolbox.synthetic_data)	Cosh (in PyDSTool.Toolbox.phaseplane)
Choice (in PyDSTool.Toolbox.NineML)	conj (in PyDSTool.Toolbox.syntheticdata)	cosh (in PyDSTool.Toolbox.phaseplane)
Choice (in PyDSTool.Toolbox.adjointPRC)	conj (in PyDSTool)	Cosh (in PyDSTool.Toolbox.synthetic_data)
Choice (in PyDSTool.Toolbox.fracdim)	conjugate (in PyDSTool.PyCont.misc)	cosh (in PyDSTool.Toolbox.synthetic_data)
Choice (in PyDSTool.Toolbox.makeSloppyModel)	conjugate (in PyDSTool.Toolbox.ActivationFuncs)	Cosh (in PyDSTool.Toolbox.syntheticdata)
Choice (in PyDSTool.Toolbox.neuralcomp)	conjugate (in PyDSTool.Toolbox.DSSRT_tools)	cosh (in PyDSTool.Toolbox.syntheticdata)
Choice (in PyDSTool.Toolbox.phaseplane)	conjugate (in PyDSTool.Toolbox.InputProfile)	count_sep() (in PyDSTool.parseUtils)
Choice (in PyDSTool.Toolbox.synthetic_data)	conjugate (in PyDSTool.Toolbox.ModelHelper)	CP_Fold (in PyDSTool.PyCont.TestFunc)
Choice (in PyDSTool.Toolbox.syntheticdata)	conjugate (in PyDSTool.Toolbox.NineML)	cPickle
classmap (in PyDSTool.fixedpickle)	conjugate (in PyDSTool.Toolbox.adjointPRC)	CPPoint (in PyDSTool.PyCont.BifPoint)
className() (in PyDSTool.common)	conjugate (in PyDSTool.Toolbox.fracdim)	create_test_fn() (in PyDSTool.Toolbox.phaseplane)
clean() (in pargs)	conjugate (in PyDSTool.Toolbox.makeSloppyModel)	create_test_fn_with_events() (in PyDSTool.Toolbox.phaseplane)
cleanLabels() (in Continuation)	conjugate (in PyDSTool.Toolbox.neuralcomp)	createGenerators() (in ModelConstructor)
cleanupMemory() (in ODEsystem)	conjugate (in PyDSTool.Toolbox.phaseplane)	createJac() (in ModelConstructor)
cleanupMemory() (in HybridModel)	conjugate (in PyDSTool.Toolbox.synthetic_data)	createJacP() (in ModelConstructor)
cleanupMemory() (in NonHybridModel)	conjugate (in PyDSTool.Toolbox.syntheticdata)	createParameterization() (in nullcline)
clear() (in nameResolverClass)	conjugate (in PyDSTool)	createQ() (in Event)
clear() (in pargs)	conjugate_gradient_step (in PyDSTool.Toolbox.optimizers.step)	createStdEvts() (in ModelConstructor)
clear() (in data_bins)	ConjugateGradientStep (in PyDSTool.Toolbox.optimizers.step.conjugate_gradient_step)	criteria (in PyDSTool.Toolbox.optimizers.criterion)
clear() (in args)	connection (in PyDSTool.Toolbox.event_driven_simulator)	criterion (in PyDSTool.Toolbox.optimizers)
clear() (in auxfnDBclass)	connectWithSynapse() (in PyDSTool.Toolbox.neuralcomp)	criterion() (in PyDSTool.Toolbox.optimizers.criterion.facilities)
clear_history() (in distance_to_pointset)	ConstraintFail (in PyDSTool.Toolbox.ParamEst)	criterion__all__ (in PyDSTool.Toolbox.optimizers.criterion)
clear_memo() (in Pickler)	cont_args_list (in PyDSTool.PyCont.Continuation)	crop() (in nullcline)
clearall() (in genDBClass)	cont_bif_points (in PyDSTool.PyCont.Continuation)	crop_2D() (in PyDSTool.Toolbox.phaseplane)
clearall() (in nameResolverClass)	contained (in PyDSTool.Generator.ADMC_ODEsystem')	cross() (in PyDSTool.Toolbox.mechmatlib)
clearall() (in pargs)	contained (in PyDSTool.Generator.Dopri_ODEsystem')	ctn_residual_info() (in PyDSTool.Toolbox.ParamEst)
clearAll() (in Diagnostics)	contained (in PyDSTool.Generator.EmbeddedSysGen')	ctsGen (in PyDSTool.Generator.baseclasses)
clearAll() (in integrator)	contained (in PyDSTool.Generator.Euler_ODEsystem')	cubic_interpolation (in PyDSTool.Toolbox.optimizers.line_search)
clearall() (in auxfnDBclass)	contained (in PyDSTool.Generator.ExplicitFnGen')	CubicInterpolationSearch (in PyDSTool.Toolbox.optimizers.line_search.cubic_interpolation)
clearErrors() (in Diagnostics)	contained (in PyDSTool.Generator.ExtrapolateTable')	current_defining_args() (in Model)
clearEvents() (in integrator)	contained (in PyDSTool.Generator.ImplicitFnGen')	curvature() (in nullcline)
clearExtInputs() (in integrator)	contained (in PyDSTool.Generator.InterpolateTable')	curvature_at_sample_points() (in nullcline)
clearInteg() (in integrator)	contained (in PyDSTool.Generator.LookupTable')	curve_args_list (in ContClass)
clearRunParams() (in integrator)	contained (in PyDSTool.Generator.MapSystem')	curve_args_list (in PyDSTool.PyCont.ContClass')
clearWarnings() (in Diagnostics)	contained (in PyDSTool.Generator.ODEsystem')	curve_list (in ContClass)
CLIP (in PyDSTool)	contained (in PyDSTool.Generator.Radau_ODEsystem')	curve_list (in PyDSTool.PyCont.ContClass')
CLIP (in PyDSTool.Toolbox.ActivationFuncs)	contained (in PyDSTool.Generator.Vode_ODEsystem')	CWConjugateGradientStep() (in PyDSTool.Toolbox.optimizers.step.conjugate_gradient_step)