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]
P
pad()
(in
PyDSTool.Toolbox.dssrt
)
plot_line_from_points()
(in
plotter_2D
)
process()
(in
BTPoint
)
padPointset()
(in
PyDSTool.Points
)
plot_markers()
(in
PyDSTool.Toolbox.prep_boxplot
)
process()
(in
BifPoint
)
Par
(in
PyDSTool.Symbolic
)
plot_nullcline()
(in
plotter_2D
)
process()
(in
BranchPoint
)
par_sensitivity()
(in
ParamEst
)
plot_PCA_residuals()
(in
PyDSTool.Toolbox.data_analysis
)
process()
(in
CPPoint
)
ParamEst
(in
PyDSTool.Toolbox
)
plot_PCA_spectrum()
(in
PyDSTool.Toolbox.data_analysis
)
process()
(in
DHPoint
)
ParamEst
(in
PyDSTool.Toolbox.ParamEst
)
plot_point()
(in
plotter_2D
)
process()
(in
FoldPoint
)
parameters
(in
PyDSTool.Toolbox.optimizers.defaults
)
plot_PP_fps()
(in
PyDSTool.Toolbox.phaseplane
)
process()
(in
GHPoint
)
Paretovariate
(in
PyDSTool.ModelSpec'
)
plot_PP_vf()
(in
PyDSTool.Toolbox.phaseplane
)
process()
(in
HopfPoint
)
Paretovariate
(in
PyDSTool
)
plot_psis()
(in
PyDSTool.Toolbox.dssrt
)
process()
(in
LPCPoint
)
Paretovariate
(in
PyDSTool.Symbolic
)
plot_radius_distribution()
(in
PyDSTool.Toolbox.fracdim
)
process()
(in
NSPoint
)
Paretovariate
(in
PyDSTool.Toolbox.ActivationFuncs
)
plot_thickness_by_dim()
(in
PyDSTool.Toolbox.fracdim
)
process()
(in
PDPoint
)
Paretovariate
(in
PyDSTool.Toolbox.DSSRT_tools
)
plot_vf()
(in
plotter_2D
)
process()
(in
SPoint
)
Paretovariate
(in
PyDSTool.Toolbox.InputProfile
)
plot_vline()
(in
plotter_2D
)
process()
(in
ZHPoint
)
Paretovariate
(in
PyDSTool.Toolbox.ModelHelper
)
plotNetworkGraph()
(in
PyDSTool.Toolbox.DSSRT_tools
)
process()
(in
FSM
)
Paretovariate
(in
PyDSTool.Toolbox.NineML
)
plotProfile()
(in
PyDSTool.Toolbox.InputProfile
)
process_list()
(in
FSM
)
Paretovariate
(in
PyDSTool.Toolbox.adjointPRC
)
plotter
(in
PyDSTool.Toolbox.phaseplane
)
process_raw_residual()
(in
PyDSTool.MProject
)
Paretovariate
(in
PyDSTool.Toolbox.fracdim
)
plotter_2D
(in
PyDSTool.Toolbox.phaseplane
)
processMacro()
(in
PyDSTool.ModelSpec'
)
Paretovariate
(in
PyDSTool.Toolbox.makeSloppyModel
)
Plotting
(in
PyDSTool.PyCont
)
processMultiDef()
(in
PyDSTool.Symbolic
)
Paretovariate
(in
PyDSTool.Toolbox.neuralcomp
)
pnnetwork
(in
PyDSTool.Toolbox.neuralcomp
)
processMultiRef()
(in
PyDSTool.Symbolic
)
Paretovariate
(in
PyDSTool.Toolbox.phaseplane
)
Point
(in
PyDSTool.Points
)
processReused()
(in
PyDSTool.ModelConstructor'
)
Paretovariate
(in
PyDSTool.Toolbox.synthetic_data
)
Point2D
(in
PyDSTool.Toolbox.phaseplane
)
processReusedC()
(in
PyDSTool.Events
)
Paretovariate
(in
PyDSTool.Toolbox.syntheticdata
)
point_keys
(in
PyDSTool.Points
)
processReusedMatlab()
(in
PyDSTool.Events
)
pargs
(in
PyDSTool.PyCont.Plotting
)
PointInfo
(in
PyDSTool.Points
)
processReusedPy()
(in
PyDSTool.Events
)
pars_array_to_dict()
(in
ParamEst
)
Points
(in
PyDSTool
)
progressBar()
(in
PyDSTool.utils
)
pars_dict_to_array()
(in
ParamEst
)
Pointset
(in
PyDSTool.Points
)
project
(in
PyDSTool.conf
)
pars_to_ixs()
(in
ParamEst
)
pointset_to_traj()
(in
PyDSTool.Trajectory'
)
project_point()
(in
PyDSTool.Toolbox.phaseplane
)
parse()
(in
parserObject
)
pointset_to_vars()
(in
PyDSTool.Variable'
)
propagate_verbosity()
(in
feature_node
)
parseMatrixStrToDictStr()
(in
PyDSTool.parseUtils
)
pointsToPointset()
(in
PyDSTool.Points
)
proper_match()
(in
PyDSTool.parseUtils
)
parserObject
(in
PyDSTool.parseUtils
)
poll()
(in
connection
)
protected_allnames
(in
PyDSTool.FuncSpec'
)
parseUtils
(in
PyDSTool
)
poll()
(in
node
)
protected_allnames
(in
PyDSTool.ModelSpec'
)
ParTestFunc
(in
PyDSTool.PyCont.TestFunc
)
pollHighLevelEvents()
(in
EventStruct
)
protected_allnames
(in
PyDSTool.Symbolic
)
partial_step
(in
PyDSTool.Toolbox.optimizers.step
)
POP
(in
PyDSTool.fixedpickle
)
protected_allnames
(in
PyDSTool.Toolbox.NineML
)
PartialStep
(in
PyDSTool.Toolbox.optimizers.step.partial_step
)
pop()
(in
FIFOqueue_uniquenode
)
protected_allnames
(in
PyDSTool.Toolbox.phaseplane
)
partition()
(in
PyDSTool.PyCont.misc
)
pop()
(in
args
)
protected_allnames
(in
PyDSTool.Toolbox.synthetic_data
)
partition_range()
(in
PyDSTool.Toolbox.dssrt
)
POP_MARK
(in
PyDSTool.fixedpickle
)
protected_allnames
(in
PyDSTool.Toolbox.syntheticdata
)
pca_dim()
(in
PyDSTool.Toolbox.data_analysis
)
popFromQ()
(in
Event
)
protected_allnames
(in
PyDSTool.Trajectory'
)
PCANode()
(in
PyDSTool.Toolbox.data_analysis
)
popitem()
(in
args
)
protected_allnames
(in
PyDSTool.parseUtils
)
PD_Det
(in
PyDSTool.PyCont.TestFunc
)
postprocess_ref_traj()
(in
feature
)
protected_auxnamesDB
(in
PyDSTool.FuncSpec'
)
PD_E()
(in
PyDSTool.Toolbox.fracdim
)
postprocess_ref_traj()
(in
L2_feature
)
protected_auxnamesDB
(in
PyDSTool.ModelSpec'
)
PDPoint
(in
PyDSTool.PyCont.BifPoint
)
postprocess_ref_traj()
(in
L2_feature_1D
)
protected_auxnamesDB
(in
PyDSTool.Symbolic
)
PERSID
(in
PyDSTool.fixedpickle
)
postprocess_ref_traj()
(in
burst_feature
)
protected_auxnamesDB
(in
PyDSTool.Toolbox.NineML
)
persistent_id()
(in
Pickler
)
postprocess_ref_traj()
(in
get_burst_active_phase
)
protected_auxnamesDB
(in
PyDSTool.Toolbox.phaseplane
)
phaseplane
(in
PyDSTool.Toolbox
)
postprocess_ref_traj()
(in
get_burst_dc_offset
)
protected_auxnamesDB
(in
PyDSTool.Toolbox.synthetic_data
)
phaseplane
(in
PyDSTool.Toolbox.phaseplane
)
postprocess_ref_traj()
(in
get_burst_downsweep
)
protected_auxnamesDB
(in
PyDSTool.Toolbox.syntheticdata
)
pi
(in
PyDSTool.Generator.ADMC_ODEsystem'
)
postprocess_ref_traj()
(in
get_burst_duration
)
protected_auxnamesDB
(in
PyDSTool.Trajectory'
)
pi
(in
PyDSTool.Generator.DDEsystem
)
postprocess_ref_traj()
(in
get_burst_isi_env
)
protected_auxnamesDB
(in
PyDSTool.parseUtils
)
pi
(in
PyDSTool.Generator.Dopri_ODEsystem'
)
postprocess_ref_traj()
(in
get_burst_passive_extent
)
protected_macronames
(in
PyDSTool.FuncSpec'
)
pi
(in
PyDSTool.Generator.EmbeddedSysGen'
)
postprocess_ref_traj()
(in
get_burst_peak_env
)
protected_macronames
(in
PyDSTool.ModelSpec'
)
pi
(in
PyDSTool.Generator.Euler_ODEsystem'
)
postprocess_ref_traj()
(in
get_burst_spikes
)
protected_macronames
(in
PyDSTool.Symbolic
)
pi
(in
PyDSTool.Generator.ExplicitFnGen'
)
postprocess_ref_traj()
(in
get_burst_trough_env
)
protected_macronames
(in
PyDSTool.Trajectory'
)
pi
(in
PyDSTool.Generator.ExtrapolateTable'
)
postprocess_ref_traj()
(in
get_burst_upsweep
)
protected_macronames
(in
PyDSTool.parseUtils
)
pi
(in
PyDSTool.Generator.ImplicitFnGen'
)
postprocess_test_traj()
(in
ModelInterface
)
protected_mathnames
(in
PyDSTool.FuncSpec'
)
pi
(in
PyDSTool.Generator.InterpolateTable'
)
Pow
(in
PyDSTool.ModelSpec'
)
protected_mathnames
(in
PyDSTool.ModelSpec'
)
pi
(in
PyDSTool.Generator.LookupTable'
)
Pow
(in
PyDSTool
)
protected_mathnames
(in
PyDSTool.Symbolic
)
pi
(in
PyDSTool.Generator.MapSystem'
)
Pow
(in
PyDSTool.Symbolic
)
protected_mathnames
(in
PyDSTool.Trajectory'
)
pi
(in
PyDSTool.Generator.ODEsystem'
)
pow
(in
PyDSTool.Symbolic
)
protected_mathnames
(in
PyDSTool.parseUtils
)
pi
(in
PyDSTool.Generator.Radau_ODEsystem'
)
Pow
(in
PyDSTool.Toolbox.ActivationFuncs
)
protected_randomnames
(in
PyDSTool.FuncSpec'
)
pi
(in
PyDSTool.Generator.Vode_ODEsystem'
)
Pow
(in
PyDSTool.Toolbox.DSSRT_tools
)
protected_randomnames
(in
PyDSTool.ModelSpec'
)
pi
(in
PyDSTool.Generator.allimports
)
Pow
(in
PyDSTool.Toolbox.InputProfile
)
protected_randomnames
(in
PyDSTool.Symbolic
)
pi
(in
PyDSTool.Generator.baseclasses
)
Pow
(in
PyDSTool.Toolbox.ModelHelper
)
protected_randomnames
(in
PyDSTool.Trajectory'
)
pi
(in
PyDSTool.Generator
)
Pow
(in
PyDSTool.Toolbox.NineML
)
protected_randomnames
(in
PyDSTool.parseUtils
)
Pi
(in
PyDSTool.ModelSpec'
)
Pow
(in
PyDSTool.Toolbox.adjointPRC
)
protected_scipynames
(in
PyDSTool.FuncSpec'
)
pi
(in
PyDSTool.ModelSpec'
)
Pow
(in
PyDSTool.Toolbox.fracdim
)
protected_scipynames
(in
PyDSTool.ModelSpec'
)
Pi
(in
PyDSTool
)
Pow
(in
PyDSTool.Toolbox.makeSloppyModel
)
protected_scipynames
(in
PyDSTool.Symbolic
)
PI
(in
PyDSTool.PyCont.misc
)
Pow
(in
PyDSTool.Toolbox.neuralcomp
)
protected_scipynames
(in
PyDSTool.Trajectory'
)
Pi
(in
PyDSTool.Symbolic
)
Pow
(in
PyDSTool.Toolbox.phaseplane
)
protected_scipynames
(in
PyDSTool.parseUtils
)
pi
(in
PyDSTool.Symbolic
)
Pow
(in
PyDSTool.Toolbox.synthetic_data
)
protected_specialfns
(in
PyDSTool.FuncSpec'
)
Pi
(in
PyDSTool.Toolbox.ActivationFuncs
)
Pow
(in
PyDSTool.Toolbox.syntheticdata
)
protected_specialfns
(in
PyDSTool.ModelSpec'
)
Pi
(in
PyDSTool.Toolbox.DSSRT_tools
)
POW_STR
(in
PyDSTool.parseUtils
)
protected_specialfns
(in
PyDSTool.Symbolic
)
Pi
(in
PyDSTool.Toolbox.InputProfile
)
Powell
(in
PyDSTool.Toolbox.optimizers.tests.test_powell
)
protected_specialfns
(in
PyDSTool.Trajectory'
)
Pi
(in
PyDSTool.Toolbox.ModelHelper
)
power
(in
PyDSTool.Symbolic
)
protected_specialfns
(in
PyDSTool.parseUtils
)
Pi
(in
PyDSTool.Toolbox.NineML
)
power
(in
PyDSTool.Toolbox.NineML
)
PROTO
(in
PyDSTool.fixedpickle
)
pi
(in
PyDSTool.Toolbox.NineML
)
power
(in
PyDSTool.Toolbox.ParamEst
)
PRPConjugateGradientStep()
(in
PyDSTool.Toolbox.optimizers.step.conjugate_gradient_step
)
Pi
(in
PyDSTool.Toolbox.adjointPRC
)
power
(in
PyDSTool.Toolbox.phaseplane
)
push()
(in
FIFOqueue_uniquenode
)
Pi
(in
PyDSTool.Toolbox.fracdim
)
power
(in
PyDSTool.Toolbox.synthetic_data
)
PUT
(in
PyDSTool.fixedpickle
)
Pi
(in
PyDSTool.Toolbox.makeSloppyModel
)
power
(in
PyDSTool.Toolbox.syntheticdata
)
put()
(in
Pickler
)
Pi
(in
PyDSTool.Toolbox.neuralcomp
)
pp()
(in
PyDSTool.Toolbox.ParamEst
)
PyCont
(in
PyDSTool
)
Pi
(in
PyDSTool.Toolbox.phaseplane
)
PRCtools
(in
PyDSTool.Toolbox
)
PyDSTool
pi
(in
PyDSTool.Toolbox.phaseplane
)
precondition()
(in
become_most_dominant
)
PyDSTool_AttributeError
(in
PyDSTool.errors
)
Pi
(in
PyDSTool.Toolbox.synthetic_data
)
precondition()
(in
join_actives
)
PyDSTool_BoundsError
(in
PyDSTool.errors
)
pi
(in
PyDSTool.Toolbox.synthetic_data
)
precondition()
(in
join_fast
)
PyDSTool_ClearError
(in
PyDSTool.errors
)
Pi
(in
PyDSTool.Toolbox.syntheticdata
)
precondition()
(in
join_slow
)
PyDSTool_ContError
(in
PyDSTool.errors
)
pi
(in
PyDSTool.Toolbox.syntheticdata
)
precondition()
(in
leave_actives
)
PyDSTool_Error
(in
PyDSTool.errors
)
PickleError
(in
PyDSTool.fixedpickle
)
precondition()
(in
leave_fast
)
PyDSTool_ExistError
(in
PyDSTool.errors
)
PickleError
precondition()
(in
leave_slow
)
PyDSTool_InitError
(in
PyDSTool.errors
)
Pickler
(in
PyDSTool.fixedpickle
)
precondition()
(in
not_op
)
PyDSTool_KeyError
(in
PyDSTool.errors
)
PicklingError
(in
PyDSTool.fixedpickle
)
precondition()
(in
predicate
)
PyDSTool_TypeError
(in
PyDSTool.errors
)
PicklingError
precondition()
(in
predicate_op
)
PyDSTool_UncertainValueError
(in
PyDSTool.errors
)
PiecewisePolynomial
(in
PyDSTool.common
)
predicate
(in
PyDSTool.common
)
PyDSTool_UndefinedError
(in
PyDSTool.errors
)
PINF
(in
PyDSTool
)
predicate_op
(in
PyDSTool.common
)
PyDSTool_ValueError
(in
PyDSTool.errors
)
PINF
(in
PyDSTool.Toolbox.ActivationFuncs
)
prep_boxplot
(in
PyDSTool.Toolbox
)
pygments_style
(in
PyDSTool.conf
)
PINF
(in
PyDSTool.Toolbox.DSSRT_tools
)
prep_boxplots()
(in
PyDSTool.Toolbox.prep_boxplot
)
PySCes_SBML
(in
PyDSTool.Toolbox
)
PINF
(in
PyDSTool.Toolbox.InputProfile
)
prep_secant_figure()
(in
PyDSTool.Toolbox.fracdim
)
PyStringMap
(in
PyDSTool.fixedpickle
)
PINF
(in
PyDSTool.Toolbox.ModelHelper
)
prepare()
(in
feature
)
PZERO
(in
PyDSTool
)
PINF
(in
PyDSTool.Toolbox.NineML
)
prepare()
(in
burst_feature
)
PZERO
(in
PyDSTool.Toolbox.ActivationFuncs
)
PINF
(in
PyDSTool.Toolbox.adjointPRC
)
prepare_conditions()
(in
ModelInterface
)
PZERO
(in
PyDSTool.Toolbox.DSSRT_tools
)
PINF
(in
PyDSTool.Toolbox.fracdim
)
prepAuxFns()
(in
DSSRT_info
)
PZERO
(in
PyDSTool.Toolbox.InputProfile
)
PINF
(in
PyDSTool.Toolbox.makeSloppyModel
)
prepCFG()
(in
DSSRT_info
)
PZERO
(in
PyDSTool.Toolbox.ModelHelper
)
PINF
(in
PyDSTool.Toolbox.neuralcomp
)
prepDEpars()
(in
DSSRT_info
)
PZERO
(in
PyDSTool.Toolbox.NineML
)
PINF
(in
PyDSTool.Toolbox.phaseplane
)
prepDirection()
(in
ODEsystem
)
PZERO
(in
PyDSTool.Toolbox.adjointPRC
)
PINF
(in
PyDSTool.Toolbox.synthetic_data
)
prepGraph()
(in
DSSRT_info
)
PZERO
(in
PyDSTool.Toolbox.fracdim
)
PINF
(in
PyDSTool.Toolbox.syntheticdata
)
prepInputs()
(in
DSSRT_info
)
PZERO
(in
PyDSTool.Toolbox.makeSloppyModel
)
plot()
(in
PyDSTool.matplotlib_import
)
prepJacobian()
(in
PyDSTool.Symbolic
)
PZERO
(in
PyDSTool.Toolbox.neuralcomp
)
plot_cycles()
(in
LimitCycleCurve
)
preprocessFlatten()
(in
ModelConstructor
)
PZERO
(in
PyDSTool.Toolbox.phaseplane
)
plot_dim_by_thickness()
(in
PyDSTool.Toolbox.fracdim
)
preprocessReuseTerms()
(in
ModelConstructor
)
PZERO
(in
PyDSTool.Toolbox.synthetic_data
)
plot_fps()
(in
plotter_2D
)
prepVarNames()
(in
DSSRT_info
)
PZERO
(in
PyDSTool.Toolbox.syntheticdata
)
plot_hline()
(in
plotter_2D
)
process()
(in
BPoint
)
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