Metadata-Version: 1.0
Name: PyRECONSTRUCT
Version: 2.0.1
Summary: Python tools for interacting with XML files associated with RECONSTRUCT
Home-page: https://github.com/wtrdrnkr/pyrecon
Author: Michael Musslewhite
Author-email: mdmusslewhite@gmail.com
License: LICENSE.txt
Description: [PyRECONSTRUCT](https://pypi.python.org/pypi/PyRECONSTRUCT)
        =============
        Authors: Michael Musslewhite, Larry Lindsey<br>
        Date Created: 3/7/2013<br>
        
        
        # Overview
        [PyRECONSTRUCT](https://pypi.python.org/pypi/PyRECONSTRUCT) provides easy access to data in XML files associated with the program [RECONSTRUCT](http://synapses.clm.utexas.edu/tools/reconstruct/reconstruct.stm).
        This package also contains several tools for managing this data:
        * mergeTool - merge series together with built-in conflict resolution (graphical or non-graphical)
        * excelTool - output data into excel workbooks (.xlsx)
        * calibrationTool - rescale contours representing images in a section
        * curationTool - check for various properties of objects in a series
        
        The functions/tools already in place can be used to develop solutions to a wide range of problems associated with RECONSTRUCT data.
        
        To start graphical tool loader, use commands in python shell:
        * `import pyrecon`
        * `pyrecon.start()`
        
        # Install Instructions
        *The build found on GitHub is the development build and may be unstable.*<br>
        *The stable version can be found here: [PyPI](https://pypi.python.org/pypi/PyRECONSTRUCT) (Python Package Index)*
        
        ### Linux
        * Install the following dependencies:
            * `python-dev`
            * `python-setuptools`
            * `libgeos-dev`
            * `libblas-dev`
            * `liblapack-dev`
            * `libfreetype6-dev`
            * `libpng-dev`
            * `gfortran`
            * `libxml2-dev`
            * `libxslt-dev`
            * `cmake`
            * `libshiboken-dev`
        * Install [PySide](http://qt-project.org/wiki/PySide)
        * Install [PyRECONSTRUCT](https://pypi.python.org/pypi/PyRECONSTRUCT) by running `python setup.py install` from its parent folder
        
        ### Windows *(discouraged: currently testing, run successfully pre 2.0.0)*
        * Download and install [Python2.7](http://www.python.org/download/releases/2.7.5/)
        * Download and install [python-setuptools](http://python-distribute.org/distribute_setup.py)
        * Download [PyRECONSTRUCT](https://pypi.python.org/pypi/PyRECONSTRUCT)
        * Run `python setup.py install` from parent folder
            * Dependencies will likely be missing, but the errors will tell you what you need
        * Download and install [lxml](https://pypi.python.org/packages/2.7/l/lxml/lxml-3.2.3.win-amd64-py2.7.exe#md5=3720e7d124275b728f553eb93831869c)
        * Download and install [Cython](http://www.lfd.uci.edu/~gohlke/pythonlibs/#cython)
        * Download and install [Scipy-stack](http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy-stack)
        * Download and install [scikit-image](http://www.lfd.uci.edu/~gohlke/pythonlibs/#scikit-image)
        * Download and install [scipy](http://www.lfd.uci.edu/~gohlke/pythonlibs/#scipy)
            * fixes missing scipy.special package
        * ...Should work now?
        	*email me if there are problems (address located in setup.py)!*
        
        ### PyRECONSTRUCT + Git Installation
        * 1) Add the following lines to your Series' repository's `.git/config` file, replacing PATH_TO_gitmerge.py appropriately:
        <pre>
        [merge "pymerge"]
                name = pyrecon mergetool driver
                driver = PATH_TO_gitmerge.py %A %B
        </pre>
        
        * 2) Add the following line to your Series' repository's `.git/info/attributes` file:
        <pre>
        `* merge=pymerge`
        
        
        
Platform: UNKNOWN
