Metadata-Version: 1.1
Name: READemption
Version: 0.3.0
Summary: A RNA-Seq Analysis Pipeline
Home-page: UNKNOWN
Author: Konrad U. Förstner
Author-email: konrad@foerstner.org
License: ISC License (ISCL)
Description: About
        -----
        
        READemption is a pipeline for the computational evaluation of RNA-Seq
        data. It was originally developed to process dRNA-Seq reads (as
        introduced by Sharma et al., Nature, 2010) originating from bacterial
        samples. Meanwhile is has been extended to process data generated in
        different experimental setups and from all domains of life. The
        functions which are accessible via a command-line interface cover read
        processing and aligning, coverage calculation, gene expression
        quantification, differential gene expression analysis as well as
        visualization. In order to set up and perform analyses quickly
        READemption follows the principal of "convention over configuration":
        Once the input files are copied/linked into defined folders no further
        parameters have to be given. Still, READemption's behavior can be
        adapted to specific needs of the user by parameters.
        
        Documentation
        -------------
        
        Documentation can be found on
        `here <http://pythonhosted.org/READemption/>`__.
        
        Installation
        ------------
        
        Short version (if you have all the requirements installed):
        
        ::
        
            $ pip install READemption
        
        `Long version <http://pythonhosted.org/READemption/installation.html>`__
        including a decryption of the requirements and how do you get them.
        
        License
        -------
        
        `ICSL <https://en.wikipedia.org/wiki/ISC_license>`__ (Internet Systems
        Consortium license ~ simplified BSD license) - see LICENSE.txt
        
        Development
        -----------
        
        -  If possible follow the principal of "convention over configuration".
           This means input file are copied/linked into a fixed location and the
           resulting files are placed in fixed locations.
        
        -  The classes should be path agnostic as far a possible. The controller
           is taking care of that and calls them adequately.
        
        -  The git braching model is very close to the one proposed
           `here <http://nvie.com/posts/a-successful-git-branching-model/>`__.
           There two main branches:
        
           -  master
           -  dev(elopment)
        
           And there are further supporting branches:
        
           -  feature branches - branched off and back to the dev branch
           -  release branches - branched off from dev and merged back into dev
              and master
           -  hotfix branches - branched off from master and merged back into
              dev and master
        
        
        
Platform: UNKNOWN
Classifier: License :: OSI Approved :: ISC License (ISCL)
Classifier: Operating System :: POSIX
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
