Metadata-Version: 1.0
Name: SimpleHMMER
Version: 0.0.2
Summary: SimpleHMMER
Home-page: http://pypi.python.org/pypi/SimpleHMMER/
Author: Michael Imelfort
Author-email: mike@mikeimelfort.com
License: GPL3
Description: .                                                                             
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        Overview
        =========
        
        SimpleHMMER is just that, a super simple way to run HMMER3 and parse the
        output. No biopython, no frills, just parse
        
        Installation
        =========
        
        Should be as simple as
        
            pip install SimpleHMMER
        
        Using MetaChecka2000
        =========
        
        Running hmmer
        
            from simplehmmer.simplehmmer import HMMERRunner
            HR=HMMERRunner(prefix='frode')
            HR.search('/path/to/some.hmm', '/path/to/some.fasta', '/path/to/save/to/')
            
        Parsing results
        
            from simplehmmer.simplehmmer import HMMERParser
            with open('/path/to/save/to/frode_out.txt', 'r') as fh:
                 HP = HMMERParser(fh)
                 while True:
                     result = HP.next()
                     if result:
                         print result
                     else:
                         break
        
        Super simple!
        
        Licence and referencing
        =========
        
        Project home page, info on the source tree, documentation, issues and how to contribute, see http://github.com/minillinim/SimpleHMMER
        
        This software is currently unpublished. Please contact me at m_dot_imelfort_at_uq_dot_edu_dot_au for more information about referencing this software.
        
        Copyright © 2012 Michael Imelfort. See LICENSE.txt for further details.
        
Platform: UNKNOWN
