COPYING
MANIFEST.in
README
setup.py
TEToolkit/Common.py
TEToolkit/Constants.py
TEToolkit/Normalization.py
TEToolkit/PeakDetect.py
TEToolkit/PeakModel.py
TEToolkit/Prob.py
TEToolkit/TEindex.py
TEToolkit/__init__.py
TEToolkit.egg-info/PKG-INFO
TEToolkit.egg-info/SOURCES.txt
TEToolkit.egg-info/dependency_links.txt
TEToolkit.egg-info/not-zip-safe
TEToolkit.egg-info/requires.txt
TEToolkit.egg-info/top_level.txt
TEToolkit/IO/FeatIO.py
TEToolkit/IO/ReadInputs.py
TEToolkit/IO/__init__.py
TEToolkit/ShortRead/ParseBEDFile.py
TEToolkit/ShortRead/__init__.py
bin/TEpeaks
bin/TEtranscripts
doc/TEPeak_manual.doc
