Metadata-Version: 1.0
Name: aai
Version: 0.0.1
Summary: Calculate amino acid identity (AAI) between genomes.
Home-page: http://pypi.python.org/pypi/aai/
Author: Donovan Parks
Author-email: donovan.parks@gmail.com
License: GPL3
Description: # AAI
        
        Calculates the amino acid identity (AAI) between prokaryotic genomes based on putative orthologous genes identified through reciprocal best blast hits as outlined in:
        
        KT Konstantinidis and JM Tiedje. Towards a Genome-Based Taxonomy for Prokaryotes. J Bacteriol. Sep 2005. 187(18): 6258-6264.
        
        ## Install
        
        The simplest way to install this package is through pip:
        > pip install aai
        
        This package requires numpy to be installed and Prodigal (http://prodigal.ornl.gov/) to be on your path.
        
        ## Cite
        
        If you find this package useful, please cite this git repository (https://github.com/dparks1134/aai)
        
        ## Copyright
        
        Copyright © 2014 Donovan Parks. See LICENSE for further details.
        
Platform: UNKNOWN
