MANIFEST.in
README
setup.py
bioasp.egg-info/PKG-INFO
bioasp.egg-info/SOURCES.txt
bioasp.egg-info/dependency_links.txt
bioasp.egg-info/top_level.txt
src/__init__.py
src/asp.py
src/graph.py
src/misc.py
src/bin/README.txt
src/data/__init__.py
src/data/bioquali.py
src/data/correlationmatrix.py
src/data/graph_parser.py
src/data/op.py
src/data/profile_parser.py
src/data/psn.py
src/data/regulonDB.py
src/data/sbml.py
src/data/sif2bm_parser.py
src/data/sif_parser.py
src/ply/__init__.py
src/ply/cpp.py
src/ply/ctokens.py
src/ply/lex.py
src/ply/yacc.py
src/query/__init__.py
src/query/experimental.py
src/query/influence_graphs.py
src/query/network_expansion.py
src/query/operon_finder.py
src/query/pm.py
src/query/psnoptimization.py
src/query/inflgraph/compute_repair_options.gringo
src/query/inflgraph/dynamic_diagnosis.gringo
src/query/inflgraph/explanation.gringo
src/query/inflgraph/pm_consistency.gringo
src/query/inflgraph/pm_guess_inputs.gringo
src/query/inflgraph/pm_mic.gringo
src/query/inflgraph/pm_prediction.gringo
src/query/inflgraph/prediction_core.gringo
src/query/inflgraph/reduction.lp
src/query/inflgraph/repair_cardinality.gringo
src/query/inflgraph/repair_core.gringo
src/query/inflgraph/repair_subset.gringo
src/query/inflgraph/subset_minimal_repair_obs.gringo
src/query/inflgraph_with_no_change_observations/minimize_inconsistencies.gringo
src/query/inflgraph_with_no_change_observations/pm_consistency_with_nc.gringo
src/query/inflgraph_with_no_change_observations/pm_prediction_with_nc.gringo
src/query/inflgraph_with_no_change_observations/prediction_core_with_nc.gringo
src/query/inflgraph_with_no_change_observations/repair_core_with_nc.gringo
src/query/metabolic_networks/loop_detection.lp
src/query/metabolic_networks/metnet2inflgraph.lp
src/query/missing_tf_problem/conflicting_genes.lp
src/query/missing_tf_problem/conflicts.lp
src/query/missing_tf_problem/consistency.lp
src/query/missing_tf_problem/consistency_old.lp
src/query/missing_tf_problem/non_conflicting_genes.lp
src/query/missing_tf_problem/scc.lp
src/query/networkexpansion/card_min_completions_all_targets.lp
src/query/networkexpansion/card_min_completions_all_targets_with_bounds.lp
src/query/networkexpansion/completions_all_targets.lp
src/query/networkexpansion/ireactions.lp
src/query/networkexpansion/unproducible_targets.lp
src/query/operon_finder/convert.lp
src/query/operon_finder/density.lp
src/query/operon_finder/filter_couples.lp
src/query/operon_finder/ksip.lp
src/query/operon_finder/preprocess.lp
src/query/psnoptimization/compress.lp
src/query/psnoptimization/functions.lp
src/query/psnoptimization/hyper.lp
src/query/psnoptimization/optimization.lp
src/query/psnoptimization/output.lp
src/query/qtl/crashtest1.lp
src/query/qtl/crashtest2.lp
src/query/qtl/crashtest3.lp
src/query/qtl/crashtest4a.lp
src/query/qtl/crashtest4b.lp
src/query/qtl/crashtest5.lp
src/query/qtl/minimal_explanations.lp
src/query/qtl/minimal_fixator_sets.lp