CLIP_analysis.py
README
__init__.py
setup.cfg
setup.py
clipper.egg-info/PKG-INFO
clipper.egg-info/SOURCES.txt
clipper.egg-info/dependency_links.txt
clipper.egg-info/entry_points.txt
clipper.egg-info/requires.txt
clipper.egg-info/top_level.txt
data/__init__.py
data/hg18.AS.STRUCTURE_genes.BED.gz
data/hg19.AS.STRUCTURE_genes.BED.gz
data/hg19.AS.STRUCTURE_mRNA.lengths
data/hg19.AS.STRUCTURE_premRNA.lengths
data/mm9.AS.STRUCTURE_genes.BED.gz
data/mm9.AS.STRUCTURE_mRNA.lengths
data/mm9.AS.STRUCTURE_premRNA.lengths
src/__init__.py
src/call_peak.py
src/peakfinder.py
src/peaksmodule.cc
test/__init__.py
test/allup_test.bam
test/allup_test.bam.bai
test/indexed_test.bam
test/indexed_test.bam.bai
test/not_indexed_test.bam
test/peak_results.BED
test/peak_results_no_overlap.BED
test/test_call_peak.py
test/test_peakfinder.py
test/test_peaks.py