#NEXUS
[SS DNA, Triticeae, short locus, Diploids only - polymorphisms - edited JAN. 93 530 chars.
hordeum vulgare exluded because probably not homologous; large unique duplications omitted]
begin data;
	dimensions ntax=22 nchar=676;
	format datatype=dna symbols="05" interleave missing=- equate="1={A-} 2={C-} 3={G-} 4={T-}";
	matrix
Aeg_bic		-TTTTTAA4TTTTTTTT--G-CGCYG-CGWG-CAAAA-CAAA--ACGCACGTGCGCGA-CATAT----GTTTAGCAYGTTTTATT-----------ATATT-GCACGTTTGC-G
Aeg_com		-TTTTTAATT-TTTTTT4-G-CGCCG-CGTG-CAAAA-CAAA--ACGCRCGT32GCGA-CATATATATGTTTAGCACGTTTTATT-----------ATTTT-GCATGTTTGC-G
Aeg_lon		-TTTTTA1TTTTTTTTT4-3-CGCTG-CGTG-CAAAA-CAAA1-ACGCACGTGCGCGA-CATAT----GTTTAGCACGTTTTATT-----------ATATT-GCACGTTTGC-G
Aeg_sears	-TTTTTAATT-TTTTTTA---CGCCG-CGTG-CAAAA-CAAA--ACGCACGTGCGCGA-CATAT----GCTTAGCACGTTTTATT-----------AGTTT-GCACGTTTGC-G
Aeg_shar	-TTTTTAATWTTWTTTT44G-CGCTG-CGTG-CAAAA-CAAA--ACGCACGTGCGCGA-CATAT----GTTTAGCACGTTTTAYT-----------ATATT-GCACGTTTGC-G
Aeg_tau		4TTTTTAATT-TTTTTT--G2CGCCG-CGT3-CAAAA1CAAA--ACGCA2GTGCGCGA-CATAT----GTTTAGCACG444TATT-----------ATTTT-GCACGTTTAC-G
Aeg_umb		TTTTTCAATT-TTTTTT--G-CGCCG-CGTG-CAAAA-CAAA--ACGCACGTGCGCGA-CATAT----GTTTAGCACGTTTTATT-----------ATTTTTGCACGTTTGT-G
Aeg_uniar	-TTTTTAATTTTTTTTT--G-CGCYG-CGTG2RAAA--CAAA--AYGCACGTGCGCGA-CATAT----GTTTAGCAYGTTTTATW-----------ATWTW-GCACGTTTGC-G
Aust_vel	-TTTTTAACATTTTTTTT-G-CGCGT-CRTGACAAA--CAGAAT-C-----------------------------CGTTTTCTT------------ATTTT-GCACGTTGGC-G
Bromus[in]	-TTTTTATTTATTTTTT--G-C--CT-CGTGGC---GTGGGAG--CGCGCGTGCGCGAT-GTAT---TTGTATGAAGTTT-CATTT----------ATTTT-CAGGATGTGT-G
Crith_del	--TTTTAAATATTTTTT--G-CGCCG-CGTG-CAAAA-CAGG--ACGCACGTGTGTGG-CATATA---TTTACCGCGTTTTRTT------------WTTT-CCCACGTTTGC-G
Hen_pers	-TTTTYAATTATWTTTT--G-CGYST-CGTGACAAA-YAT---SACGCWCGTGCAAGA-YATAYA---ATARCCACRTTCTCTC------------ATTTT-CCAYGTYTGC-G
Psa_jun		-4TTTTAAAWWWWWWTT---SCGTCT-CGTGGCAAG---TATAW-CGCACGAGCGCGA-TATAT----TTTAACCC-GTTTTT----------CTATTTTT-CCACGTGTGA-G
Pse_lib		-TTTTTAAWTTTTTT4-Y2G-CGCST-SGTGACAAA--CAWAA--CGCACGTGCGCGA-YATAT----ATTAACCCCGTTWT-CTT----------ATTTT-YSACRTYTGY-G
Pse_spic	TTTTTTAATT-TTTTTT--G-CGCGT-CGTGACAAA--CAAA--ACGCACGYGCGTGA-CATAT----ATTAACCCCGTTT-TCTT----------ATTTT-CCATGTTTGC-G
Sec_cer[2]	-TTTTWAATWATTTTKT--G-YGTCT-CGTGACAAG-TAYA4141CGCACGTGCARGA-TATAT----RTT3RCCVCRTTTA4TTTTCTTCTTCYRRTTTT-YCACGTTTRY1G
Sec_mon		-TTTTWAATWATTTTTT--G-CGTCT-CGTGACAGG-TAT--A4ACGCACGTGCARGA-TATRT----ATTGACCCCGTTTATTTTTCTTCTTCTGMTTTT-CCACGTTTGC-G
Tae_cm		TTTTTTAACATTTTTT---G-CGTAG-TGYG-CAAAA-CAAA--ACGCACGTGCGCGG-CATAT----ATTTACCATGTTTGATT-----------ATTTT-CCACGTTTGC-G
Thino_bes	-TTTTTAATT--TTTTT--G-YGCCG-CGTG-CAAAA-CAAA--ACGCACGCGCRCGG-CATAT----ATTTACCACGTTTCATTT----------ATTTT-CCACGTTTGC-G
Thino_el	-TTTTAAATT-TTTTTTT-G-CGCGT-CGTGA-AAAA-GAAA--ACGCACGTGCGTGA-CATATA---TTTCCCCCCATTTTATT-----------ATTTT-CCACGTTTGC-G
Thino_scir	-TTTTAAATTATTTTTT--G-CGCCT-CGTGACAAA--CATA--TCGCACGTGCGCG---ATATATA-CTAACCCCGCTATATT------------ATTTTTT-ACGTTTGC-G
Trit_mon	-TTTTTAAWTATTTTT---G-CGTGA2CGTG-CRAAW-MAAA--ACRCACGTGCGCGG-CATATA----TTTACCACGTTTCATT-----------ATTTT-GCAYGTTTGC-G


Aeg_bic		GTAAGTTTT-AGCTCRCTRCTCATTATTCACGC-GTCCA--------------------------GCGTGTT-CTGAAAGGGGTCGAAACCA-TGGTAAATA
Aeg_com		GTAAGTTTT-AGCTCGCTGCTCATTATTCACGC-GTCTAGCGGCGGC--------------AA--GCGTGTT-CTGAA----------------TGTTAATA
Aeg_lon		GTAAGTTTT-AGCTCACTACTCATTATTCACGC-GTCCA--------------------------G234GTT-CTGAAAGGGGTCGAAACCA4TGGTAAATA
Aeg_sears	GTAAGTTTT-AGCTCGCTGCTCATTATTCACGC-GTCTA--------------------------GCGTGTT-CTGAAAGGGGTCGAAACCA-TGGTAAATA
Aeg_shar	GTAAGTTTT-AGCTCACTACTCATTATTCACGC-GTCCA--------------------------GCGTGTT-CTGAAA3GGGTCGAAACCA-TGGTAAATA
Aeg_tau		GTAAGTTTT-AGCTCGCTGCTCATTATTCACGC-GTCTA3CGSSGSS--------------AA--GCGTGTT-CTGAAAGGGGTCGAAACCA-TGGTAAATA
Aeg_umb		GTAAGTTTT-AGCTCGCTGCTCATTATTCACGC-GTCTA--------------------------GCGTGTT-CTGAAAGGGGTCGAAAGCA-TGGTAAATA
Aeg_uniar	GTRAGTTTT-AGCTCGYTGCTCATTATTCACGC-GTCTAGCG3CGGC--------------AA--GC-TGTT-CTGAAAGGGGTCGAAACCA-TGGTAAAAA
Aust_vel	----------------------------------------CGGCAAG3TTC-----------------------TGAAAGGGGTGGAGACCG-TGGWAAATA
Bromus[in]	ATACMTTTT-AACTCATTACTTGGTATTCACGC-ATTTAG-GGCGATGTTTGTGGAGCGGCA-TGCTCGTTT-TTGAAAGGG-TCGAAA-------TAATGG
Crith_del	TTAAGYTTA-AGYTCGTTGCTCATTATTCRCGT-GTCCAGCGGCGGHKKT4GYGGCGCGGCAA--G2G-TTM-V1GAAATGGGTTGAAACCG-TGGTAAATA
Hen_pers	RHGYGTTTT-AGCTCGSYACTWATWATTCMSRY-GTACMTCGGCGRCSTT-GYGGMRCGGAAR--GC1YRWT-HCKRARRGGGTCKAAACCG-TGGTAMATA
Psa_jun		ATATGTTTT-AAATCGCAGCTAACTCTTCACGC-GTCCAAGCGACGGCGTCGTGGCGCGGCA--TGCGCGTT-CTGAGAG-GGTCGAAAGGG-TGGCACATT
Pse_lib		RTAYGYTTT-AGCTCGSTGCTCATTAYTCRCGC-GTCTAGSG3CGGCGTT-GTGGCGCGRMAA--GSKTBY--Y431AARGGGTCRAAACCG-TGGTWAATA
Pse_spic	GTACGTTTT-CGCTCGCTGCTCATTATTCACGC-GTCTAGCGGCGGCGTT-GTGGCGCGGCAA----SSGTT-CTGAAAGGGGTCGAGACCG-TGGTAAATA
Sec_cer[2]	AT1YGTTTT-AKKYCRGTGCTTATTATTYACSC-GTCCAKCRRCRRCGYT-G4GGCACGKCRA3TCAY-GTT-TYGAAASYGGTCGAAACCR-TRRTAA1GA
Sec_mon		ATACGTTTT-AGGCCGGTGCTTATTATTCACGC-GTCCAGCGGCRRYGTT-G-GGCACGKCAA-TCAC-GTT-TYGAAAGTGGTCGAAACCG-TAGTAAATA
Tae_cm		GCAAGTTTTTAGCTCGCTGCTCATTATTCACGC-GTCTAGCGSYGGCGT3TGTGGCGCGAGRA--GCGTGCT-CTGAAAGGGATCGAAACCG-TGGTAAATA
Thino_bes	GTAAGTTTT-AGCTCGCTGCTCACTATTCACGC-GTCTAGCGGCGGCGTT-GTGGCGCGGCAG--GCGCGCT-CTGAAAGGGGTCGAAACCG-TGGTAAATA
Thino_el	GTGCATTTT-AGCTCGCTGCTCATTATTCACGC-GTCTAGCCGCGGCATT-GTGGTGCGGCAA--GAGCGTT-CTAAAAGCGGTCGAAAAAA----TA----
Thino_scir	ATATGTTTT-AGCTCGCTGCTCATTGCTCACGC-GTCTAGGGGCGGCTTT-GCGGCGCG--AA-GAGCCGTT-CTGAAGGGGGTGGAAAAAA----TA----
Trit_mon	RTAAG4TTT-AGCTCGTTGCYCATKATTCACGC-GTGTA3CGRCGGG-------------------------------------------------------

                                                    
Aeg_bic		GGCACTGGTGYGG--TT-G--------------------RACC-GTGGT-AAAYTCGTCTCCGTAG-TTGAGCGGGAGS3G-----CCAAAGSAATGTG-CAA-TCGT
Aeg_com		GGCACTGGT3CGG--TT-G--------------------AACC-GTGR-AAAACTCGTCTCCGTAG-TAGAGCGGGAGCGG-----CCARAGGAATGTG-CAA-TCGT
Aeg_lon		GGCACTGGTGTGG--TT-G--------------------AACC-GTGGT-AAATTCGTCTCCGTAG-TTGAGCGGGAGGGG-----CCAAAGGAATGTG3CAA-TCGT
Aeg_sears	GGCACTGGCGCGG--TT-G--------------------AACC-GTGGT-AAACTCGTCTCCGTAG-TTGAGCGGGAGCGG-----CCAAAGGAATGTG-CAA-TCGC
Aeg_shar	GGCACTGGTGTGG--TT-G--------------------AACC-GTGGT-AAAYKCGTCTCCGTAG-TTGAGCGGGAGGGG-----CCAAAGSAATGTG-CAA-TCGT
Aeg_tau		GGCACTGGTGCGG--TT-G--------------------AACC-GTGGTAAAACTCG42TCTGTAG4TTGAGCGGGA3CGG-----CCAAAGGAATGTG-CAA-TCGT
Aeg_umb		GGCACTGGTGCGG--TT-G--------------------AACC-GTGGT-AAACTCGTCTCCGTAG-TTGAGCGGGAGCGG-----CCCAAGGAATGTGG-AA-TCGT
Aeg_uniar	GGCACTGGTGCGG--TT-G--------------------AACC-GTGGT-AAACTCGTCTCCGTAG-TTGAGCGGGAGCGGTCCTCTCAAAGGAATGTG-CAA-TCKT
Aust_vel	CGTGCTGGTGCGG--TT-G-AGA-GRGAGG--GGTG-GYAACC-GTSGT-AAACTCGTCTCCGTAG-TTGTGCGGGAGAGG-----CCAAAAGAATGTA-CACCTCGT
Bromus[in]	CAATTACCGTGTATGTG-GCAGAGGGGGGAAAGGTG--AAAACAACGGTGAA-TTCGTTT-----GAGCGCAAGGGGA-------GCC-----------------CGT
Crith_del	GGCGCTGG4KCGG--TT4G-AGA--GGGAGG34T4G-3AAACC-GTGGT-AAACTCGTCTCBKTGG-TTGAGYGGGGAGCG----SCCAAAGCA1TGYAS-AV-YCGT
Hen_pers	CGYGTTRCRGCGG--TT-K-WGG--GGSAG-TGGTS-SAAACC-RHGGT-AAAGYCGTCTCCKTAG-TYGRRCGGGAGTGG-----GKMAAATAATGTAG-AA-TCRT
Psa_jun		TGCGTTGCTGCGG--TT-G--GGA-GGGAGG-GGTA-GAAACCA-TGGT-AAATTCGTCTCCRTAG-TTGAGCGGGAGGGGT----CYAG-ATAACGTAG-AA-TCGT
Pse_lib		CGTGKYGRTGCGG--CT-K-AGA--GGGAGGG-GTG-3AAACC-GTGGT-AAACTCGTCTCCGYAG-TTGAGYGG3AGYGG-----CCA1AAGRATGYRC-AA-TCRT
Pse_spic	CGTGGTGGTGCGG--TT-G-AGA--GGGAGG-GGTG-GAAACC-GTGGT-AAACTCGTCTCCGCAG-TTGAGCGGGAGTGG-----CCAAAAGAATGTG-CAA-TCGY
Sec_cer[2]	Y3CGTTGCTGCRG--YG-R-AGA--GGRAGGT-GTGA3TAAAC1GTGGT-AAAGTCGYGTCCGTRGT-AGAG33R3AGRA3T--GGCCG1AAWAAKGTAG-AA-TCGT
Sec_mon		CGCGTTGCTGCGG--CG-G-AGA--GGGAGGT3GTRM-TAAAC-GTGGT-AAAGTCGCGTCCGWKG4-AGAGGGAGAG-AGT--GGCC3AAAWMAKGTAG-AA-TCGT
Tae_cm		GGCGCTGGTGCGG--T4-G-AGAGGG--AGG-SGTG-GAAAMC-GTGGT-AAA2TRGTCTTCGTAG-TTGAGCGGGAGY33-----CCAAAGCAATGTA-CAA-TAGT
Thino_bes	GGCGCTGGTGCGG--TT-G---AGGGGGAGG-GGTG-GAAACC-GTGGT-AAAGTCGTCTCCGTAG-TTGAGCGGGAGYGG-----CCAAAGCAATGTA-CAA-TCGT
Thino_el	CGGCTTGCTGCGG--TT-G-AGAGAGGGAGG-GGTG-GAAACC-GTGGT-AAACTCGTCTCGGTAG-TTGAGCGGGAGCGG-----CCAAAGCAATGTA-CAA-TCGT
Thino_scir	CGTGTTGCTGCGGTATA-G-AGGGAGG-----AGTGGGAAACC-ATGGT-AAACTCGTCTTCGT-GTTTGAGCGGGGG-AG-----CCAAGGCAACTGTACMA-TCGT
Trit_mon	---------------------------------------------------------------------------------------CAAAGCAAAGTG-CAA-CCGT
											

Aeg_bic		GTGTGTAGTGGAGCT--GGGA-GGGGCAAGCAT--AA-GGG-ACGAA-GAC3GGGG-41ACA-TGTCGGATG2CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT1CAGAA-
Aeg_com		GTGTGTGGTGGAGCT--GGGA-GGGGCAAGCAT--AA-KGG-ACGAA-GACGGGGG-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-CAGAM-
Aeg_lon		GTGTGTAGTGGAGCT--GGGA3GGGGCAAGCAT--AA3GGG-ACGAA-GACGGGGG-TWACA-TGTCGGAT3CCSAT2CATACC-AGC-ACTAAA1GCA2YG3GAT3CC3CAT2CAGAA-
Aeg_sears	GTGTGTAGTGGAGCT--GGGA-GGGGCAAGCAT--AA-GGG-ACGAA-GACGGGGA-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-CAGAA-
Aeg_shar	GTGTGTAGTGGAGCW--GGGA-GGGGCAAGCAT--AA-GGG-ACGAA-GACGGGGG-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ASTAAA-GCACMG-GAT-CC-CAT-CAGAA-
Aeg_tau		GTGTGTAGTGGAGCT--GGGA-GGGGCAAGCAT--AA-GGG-ASSAA-GACGGGGG-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA3GCACCG-GAT-CC-CAT-CAGAA-
Aeg_umb		GTGTGTAGTGGATCT--GGGA-GGGGCAAGCAT--AA-GGG-ACGAA-GACGGGGG-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-CAGAA-
Aeg_uniar	GTGTGTAGTGGAGCT--GGGA-GGGGCGAGCAT--AA-GGG-ACKAA-GACGGGGG-CAACA-TGTTGGATG2CGAT-CATACC-AGC-ACTAAA-GYMYMG-GAT-CC-C1T1CAGAA-
Aust_vel	CTTTGTAGCGGCGCT--GGGA-GGGGMWAGCAT--AA-GGY-ACGAAGG-CGGGAG-TAACA-TGTCGGATG-YGAT-CATACC-AGC-ACTAAA-GCMM2G-GAT-CC-CWT-CAGAA-
Bromus[in]	CTCCGTAGTGCATCT--GGGA-GTGAGAGGCAT--AA-GGG-GCGAAGG-TTGGGG-AAAC-TTGACGGATG-CG-ATCATACC-AGC-ACTAAA-GCACCG-GATCCC-CAT-CAAAAA 
Crith_del	CTTTGTAGTGRAGCC--GGKA-GRGGCAAGCAT--AA-GGD-RYGAAGR-MGGGGSRAAACA-TGTYGRATG-CGAT-CATACC-AGC-ACTAAA-GCAMCG-GAT-CC-CAT-YAGAA- 
Hen_pers	C21CGTAG43GAT2T43GG-A-GGG3CAAGCAT--RA-GGR-MCKAAGGCDGGG3A-TAASA-TGTYGGATG-CGAT-YATACC-AGC-AYTAAA1GCAY2G-GAT-CC-CA42-ARAA-
Psa_jun		CTCCGTAGTGGAACT--GGGA-GGGGCAWGCAT--AA-GGG-AYRAAGAA-GTAGR--AACA-TGTCGGATG-CAAT-CATASS-AGC-ACTAAA-KCACCG-GAT-CC-CAT-CAGAA-
Pse_lib		CTWTGTASYGGAG2T--GGGA-GGGGCA1GCAT--AA-GGG-AMGAAGRM-GGGG-341ACA-TGTCGGATG-CGAT-CATACC-AGS-ASTAAA-GCACCG-GAT-CC-CAT-CAGAA-
Pse_spic	CTTTGTAGTGGAGCT--RGGA-GSGGCAAGCAT--AA-GGG-ACGAAGG-CAGGGG-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-CAGAA-
Sec_cer[2]	CCTCGTAGCKGGYCT--RGGA-GGGGMAAGCAT--AA-GGA-GSGAAGR-YGGGGA3TAACA3TGTYRGATG-CGAT-CATACC-AGC1ACTAAA-GCACSG-GAT-CC-CAT-CAGAA-
Sec_mon		CCTC3TAGCGGGCCT--GGGA-GGGGCAAGCAT21MA-GGA-GSGAA3GACGGGGA-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-CAGAA-
Tae_cm		CTTTGTAGTKGAG24--3331-3GGGCAAGCAT--AA-GGG-AMGAA-RASGGGGK-TA1CA-TGTYGGATG-CGAT-CATACC2AGM-ACTAAA-GCAMYG-GAT-CC-CAT-CAGAA-
Thino_bes	CTTTGTAGTGGAGCT--GGGA-GGGGCAAGCAT--AA-GGG-ACGAA-GACGGGGG-TAACA-TGTCGGATG-CRAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-CAGAA-
Thino_el	CTTTGTAGTGGAGCT--GGC--GGGGCAAGCAT--AA-GGG-ACGAA-GACGGGGG-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-GAGAA-
Thino_scir	CTCTGCAGTGGACCT--GGGA-GTGGCTAGCAT--AA-GGG-ACGAA-GGCGGGGG-TAACA-TGTCGGATG-CGAT-CATACC-AGC-ACTAAA-GCACCG-GAT-CC-CAT-CAGAA-
Trit_mon	GTGTGTRGTGGA3CT--GRGA-GGGGCAAGCATM--A-GGG-ACGAA-GACGRGGG-TRACA-TGTCGGATG-CGAT-CATACY-AGC-ACTAAA-GCAYCG-GAT-CC-CAT-CAGAA-


Aeg_bic		CTYCGAAGTT1AAGCGTGC--TTKGGCGAGA3TA-GTAC-TAGGATRGGT3GACCTCCTGGGAA-G3TCC-TCGTGTTGCATTCCC
Aeg_com		CTCCGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Aeg_lon		CTYYGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGRATWGKT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Aeg_sears	CTCCGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Aeg_shar	CTCCGAAG4T-AAGCGTGC--TT3GGCGAGAGTA-GTAC-TA3GAT3GGT-GACCTCCTGRGAA1G-TCC-TCGTGTTGCATTCCC
Aeg_tau		CTCCGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCYTGGGAA-G2TCC-TCGTGTTGCATTCC2
Aeg_umb		CTCCGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCC-
Aeg_uniar	CTCCGAAGTT-AAGCGTGC32TTGGG2GAGAGTA-GTAC-TAGGRTRGGT-GACCTCCTRGGAA-G-TCC2TCGTGTTGCATTCCC
Aust_vel	CTCCGAAGTT-AAGCGTGC--TTGGGYGAGAGTA-GTAC-TAGGATRGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCARTCCC
Bromus[in]	CTCCGAAGTTAAACCGTGC--TTGG-CGAGAGTAAGTACCTAGGATGGGT-GACCCCCTGGGAA-G-TCCCTCGTGTTGCA-TCCC
Crith_del	CTCCGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCS
Hen_pers	YTCCRAAGTT-AAGCRTGC-WTG2GGYGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGKAA-G-TCC-TYGWKTTGCATTCCC
Psa_jun		CTCCGAAGTT-AAGCGTGC--TTGGGCKAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Pse_lib		CTCCGAAGTT-AAGCRTGS--TTGGGCGAKAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Pse_spic	CTSCGAAGTT-AAGCGTGC--TTGSGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Sec_cer[2]	YTCCGAAGTT-AAGCRTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTSGGAA-G-TCC4TCRTGTTGCATTCMC
Sec_mon		CTCCGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCAYTCCC
Tae_cm		CTCCGAAGTT-AAGCGTGC--TTGGGCGAKAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCC-
Thino_bes	CYCCGAAGTT-AAGCGTGM--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Thino_el	CTCCGAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
Thino_scir	CTCCAAAGTT-AAGCGTGC--TTGGGCGAGAGTA-GTAC-TAGGATAGAT-GACCTCCAGGGAA-G-TCC-TCGTGTTGCATTCCC
Trit_mon	CTYCGAAGTT-AAGCRTGC--TTGGGCGAGAGTA-GTAC-TAGGATGGGT-GACCTCCTGGGAA-G-TCC-TCGTGTTGCATTCCC
[-CGAGAGTAGTAC-TAGGACAGG insert into gene in psli#1]
[TAAGTAGTATAGGACATTAT, TTATT, GGTTGTAGTGGTAGTAAGAA inserts in thsc5]


	[chloroplast DNA nchar = 146]
	
				   
			 [HindIII	    BamHI  			  PstI  KpnI   BglII                       PvuI  ]   
			 [        11111         111111112222                        11111111122222222        ]  
			 [123456780123  34567890123456780123  2345  12345  12345678901345678902345678  123456]  
Aeg_bic		  ---500------  50500555550500555000  5550  00005  55000500005555000500005000  005555
Aeg_com		  ---500------  50500555550500555000  5555  00005  55000500005555000505005000  005555
Aeg_lon		  ---500------  50500555550500555000  5550  00005  55000500005555000500000000  005555
Aeg_sears	  500500005000  50500555550500555000  5550  00005  55000500005555000500005000  005555
Aeg_shar	  ---500------  50500555550500555000  5550  00005  55000500005555000500000000  005555
Aeg_tau		  500500005000  50500555550500555000  5550  00005  55000500005555005505005050  005555
Aeg_umb		  500500005000  505005055-0500555000  5550  00005  55000500005555005505005005  005555
Aeg_uniar	  500500005000  50500555550500555000  5555  00005  55000500005555000505005000  005550
Aust_vel	  505500005000  50505555000500555000  --5-  00005  55005500005555550055005000  005555
Bromus[tec]	  5005000-5000  50505550500000005005  055-  00005  500055-00055050500-5005--0  00-055
Crith_del	  500500005000  50500555500500555000  5555  00005  5----5-0005555050055005000  005555
Hen_pers	  500500005000  50505555500500555000  505-  00005  5500-5-0000050050055005000  005555
Psa_junc	  500550005000  50505550500500555005  --5-  00005  50505505505505050005005000  055555
Pse_lib		  500500055000  50500555550500555000  055-  00005  55000500005555550505005000  005555
Pse_spic	  500500005000  50500555550500555000  055-  00005  55000500005555050505005000  005555
Sec_cer		  500500005000  505005555-0500555000  5550  00055  5500---0005555050505005000  005555
Sec_mon		  500500005000  505005555-0500555000  5550  00055  5500---0005555050505005000  005555
Tae_cm		  550500005000  50500555500500555000  5550  00005  5500-5-0005555-55505005000  005555
Thino_bes	  500500055000  50500555550500555000  055-  00005  55000500005555550505005000  005555
Thino_el	  500500055000  50500555550500555000  055-  00005  55000500005555550505005000  005555
Thino_scir	  500500055000  50500555550500555000  055-  00005  55000500005555550505005000  005555
Trit_mon	  ---500------  50500555550500555000  5550  00005  55000500005555005505005000  000555
	
			[SacI  SalI ScaI          SmaI       XbaI             XhoI  EcoRI                    Del]
			[                   1111                     1111111                1111111111222222    ]
			[1234  523  123467890134  123456789  123567890234567  1234  234567890123456789012345 12 ]
Aeg_bic		 5550  ---  ------------  505005000  000550055055505  5500  550500505500000000000500 00
Aeg_com		 5505  ---  ------------  505005000  000550055055555  5500  550500505500000000005505 00
Aeg_lon		 5550  ---  ------------  505005000  000550055055500  5500  550500505500000000000500 00
Aeg_sears	 5550  555  500055000505  505005000  000550055055505  5500  550500505500000000000500 00
Aeg_shar	 5550  ---  ------------  505005000  000550055055500  5500  550500505500000000000500 00
Aeg_tau		 5500  555  500055000505  505005000  000550055055505  5500  550500505500000000000005 0-
Aeg_umb		 5500  555  500055000505  505005500  000550055055505  5500  550500505500000000000505 00
Aeg_uniar	 5505  5-5  500055000505  505005000  000550055055505  5500  550500505500000000005550 0-
Aust_vel	 5500  555  500555500505  500005000  00005500-050505  5500  550000005500000000500505 05
Bromus[tec]	 0000  550  000505500550  550005000  050555055055505  5500  550000005500000000-50505 00
Crith_del	 5500  555  500055000505  500505000  000550055055505  5500  550500505500000000000505 00
Hen_pers   	 5500  555  500555000505  500005000  000555050055505  5550  550000-00500000000000505 05
Psa_junc	 5000  050  055505500505  050005000  005555055055505  5500  555505005000000000050505 00
Pse_lib		 5500  555  500555050505  500005000  000555055055505  5500  550550505500000000050505 50
Pse_spic  	 5500  555  500555050505  500005000  000555055055505  5500  550550505500000000050505 50
Sec_cer		 5500  555  500055000505  505005000  550550055055505  5500  550500505500000000000505 00
Sec_mon		 5500  555  500055000505  505005000  550550055055505  5500  550500505500000000000505 00
Tae_cm	 	 5500  550  500055000505  505005000  000550055055505  5500  550500505500000000050505 00
Thino_bes	 5500  555  500555050505  500005000  000555055055505  0500  550550505500000000050505 50
Thino_el	 5500  555  500555050505  500005000  000555055055505  5500  550550505500000000050505 50
Thino_scir	 5500  555  500555050505  500005000  000555055055505  5500  550550505500000000050505 50
Trit_mon	 5500  ---  ------------  505005005  000550055055505  5500  550500505550000000000505 00
	
	;	 
	 
	end;