LICENSE.txt
MANIFEST.in
README.rst
setup.py
dms_tools.egg-info/PKG-INFO
dms_tools.egg-info/SOURCES.txt
dms_tools.egg-info/dependency_links.txt
dms_tools.egg-info/requires.txt
dms_tools.egg-info/top_level.txt
docs/Makefile
docs/README.rst
docs/algorithms.rst
docs/citations.rst
docs/conf.py
docs/diffprefs_logoplot.pdf
docs/dms_correlate.rst
docs/dms_editsites.rst
docs/dms_inferdiffprefs.rst
docs/dms_inferprefs.rst
docs/dms_logoplot.rst
docs/dms_merge.rst
docs/examples.rst
docs/fileformats.rst
docs/index.rst
docs/inferdiffprefs_algorithm.rst
docs/inferprefs_algorithm.rst
docs/installation.rst
docs/pref1_vs_pref2_corr.pdf
docs/prefs_logoplot.pdf
docs/prefs_logoplot_withoverlay.pdf
docs/programs.rst
docs/pythonapi.rst
docs/weblinks.txt
scripts/dms_correlate
scripts/dms_editsites
scripts/dms_inferdiffprefs
scripts/dms_inferprefs
scripts/dms_logoplot
scripts/dms_merge
src/__init__.py
src/_metadata.py
src/_weblogo_template.eps
src/file_io.py
src/mcmc.py
src/parsearguments.py
src/plot.py
src/simulate.py
src/utils.py
src/weblogo.py
tests/README.rst
tests/run_tests.py
tests/test_configuration.txt
tests/test_inferdiffprefs.py
tests/test_inferprefs.py
tests/test_site_inferdiffprefs.py
tests/test_site_inferprefs.py
tests/test_inferdiffprefs_files/actual_diff_prefs.txt
tests/test_inferdiffprefs_files/inferred_diffprefs.txt
tests/test_inferdiffprefs_files/inferred_to_actual_corr.txt
tests/test_inferdiffprefs_files/simulated_depth_1e+07_s1.txt
tests/test_inferdiffprefs_files/simulated_depth_1e+07_s2.txt
tests/test_inferdiffprefs_files/simulated_depth_1e+07_start.txt
tests/test_inferprefs_files/actual_prefs.txt
tests/test_inferprefs_files/inferred_prefs.txt
tests/test_inferprefs_files/inferred_to_actual_corr.txt
tests/test_inferprefs_files/simulated_errs_depth_2e+06_errpost.txt
tests/test_inferprefs_files/simulated_errs_depth_2e+06_errpre.txt
tests/test_inferprefs_files/simulated_errs_depth_2e+06_post.txt
tests/test_inferprefs_files/simulated_errs_depth_2e+06_pre.txt