ete2.treeview.faces.SequenceFace

Class SequenceFace

object --+ | Face --+ | SequenceFace

Creates a new molecular sequence face object. Arguments description --------------------- seq: Sequence string to be drawn seqtype: Type of sequence: "nt" or "aa" fsize: Font size, (default=10)

Instance Methods

[hide private]

__init__(self, seq, seqtype, fsize=10, aafg={'-': '#000000', '.': '#000000', 'A': '#000000', 'B': '#000000..., aabg={'-': '#FFFFFF', '.': '#FFFFFF', 'A': '#C8C8C8', 'B': '#FF69B4..., ntfg={' ': '#000000', '-': '#000000', '.': '#000000', 'A': '#000000..., ntbg={' ': '#FFFFFF', '-': '#FFFFFF', '.': '#FFFFFF', 'A': '#A0A0FF...)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature source code

update_pixmap(self)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Inherited from Face

_height(self)

source code

_size(self)

source code

_width(self)

source code

load_pixmap_from_file(self, filename)

source code

Properties

[hide private]

Inherited from object: __class__

init(self, seq, seqtype, fsize=10, aafg=`{'-':` `'#000000',` `'.':` `'#000000',` `'A':` `'#000000',` `'B':` `'#000000...`, aabg=`{'-':` `'#FFFFFF',` `'.':` `'#FFFFFF',` `'A':` `'#C8C8C8',` `'B':` `'#FF69B4...`, ntfg=`{'` `':` `'#000000',` `'-':` `'#000000',` `'.':` `'#000000',` `'A':` `'#000000...`, ntbg=`{'` `':` `'#FFFFFF',` `'-':` `'#FFFFFF',` `'.':` `'#FFFFFF',` `'A':` `'#A0A0FF...`)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)