LICENSE.txt
MANIFEST.in
Makefile
README.md
README.rst
distribute_setup.py
install_requirements.txt
requirements.txt
setup.py
dist-utils/README.txt
dist-utils/cluster.json
dist-utils/grape-buildout.py
dist-utils/grape.py
dist-utils/jobs.json
docs/Makefile
docs/source/Grape-Header.png
docs/source/conf.py
docs/source/execution.rst
docs/source/file_formats.rst
docs/source/getting_started.rst
docs/source/index.rst
docs/source/installation.rst
docs/source/projects.rst
grape/__init__.py
grape/buildout.conf
grape/buildout.py
grape/cluster.json
grape/commands.py
grape/format.json
grape/grape.py
grape/grapeindex.py
grape/install_module.py
grape/tools.py
grape/utils.py
grape/cli/__init__.py
grape/cli/utils.py
grape_pipeline.egg-info/PKG-INFO
grape_pipeline.egg-info/SOURCES.txt
grape_pipeline.egg-info/dependency_links.txt
grape_pipeline.egg-info/entry_points.txt
grape_pipeline.egg-info/requires.txt
grape_pipeline.egg-info/top_level.txt
test_data/test.csv
test_data/test.tsv
test_data/home/modules/gemtools/1.6.1/activate
test_data/home/modules/gemtools/1.6.1/bin/gemtools
test_data/project_conf/.grape/config
test_data/project_conf/.grape/stats
test_data/project_fastq/data/fastq/first_1.fastq
test_data/project_fastq/data/fastq/first_2.fastq
test_data/project_fastq/data/fastq/second.fq
test_data/project_flat/.grape/config
test_data/project_flat/data/first_1.fastq
test_data/project_flat/data/first_2.fastq
test_data/project_flat/data/second.fq
test_data/project_index/.index
test_data/project_index/.grape/config
test_data/project_index/.grape/meta.inf
test_data/project_subs/data/first/first_1.fq
test_data/project_subs/data/first/first_2.fq
test_data/project_subs/data/second/fastq/second.fq
tests/__init__.py
tests/test_cli.py
tests/test_config.py
tests/test_datasets.py
tests/test_index.py
tests/test_modules.py
tests/test_projects.py
tests/test_tools.py