Metadata-Version: 1.0
Name: iggy
Version: 0.2
Summary: Influence graph analysis, consistency check, repair and prediction 
Home-page: http://pypi.python.org/pypi/iggy/
Author: Sven Thiele
Author-email: sthiele78@gmail.com
License: GPLv3+
Description: Installation
        ============
        
        
        You can install iggy by running::
        
        	$ pip install --user iggy
        
        The executable scripts can then be found in ~/.local/bin.
        
        
        Usage
        =====
        
        Typical usage is::
        
        	$ iggy.py network.sif observation.obs --show_colorings 10
        
        For more options you can ask for help as follows::
        
        	$ iggy.py -h 		
        	usage: iggy.py [-h] [--autoinputs] [--scenfit] [--show_colorings SHOW_COLORINGS] [--show_predictions] networkfile observationfile
        	
        	positional arguments:
        	  networkfile           influence graph in SIF format
        	  observationfile       observations in bioquali format
        
        	optional arguments:
        	  -h, --help            show this help message and exit
        	  --autoinputs          compute possible inputs of the network (nodes with
        				indegree 0)
        	  --scenfit             compute scenfit of the data, default is mcos
        	  --show_colorings SHOW_COLORINGS
        				number of colorings to print, default is OFF, 0=all
        	  --show_predictions    show predictions
        
        
        The second script contained is opt_graph.py
        Typical usage is::
        
        	$ opt_graph.py network.sif observations_dir/ --show_repairs 10
        
        For more options you can ask for help as follows::
        
        	$ opt_graph.py -h 	
        	usage: opt_graph.py [-h] [--autoinputs] [--show_repairs SHOW_REPAIRS]
        			    [--opt_graph]
        			    networkfile observationfiles
        	
        	positional arguments:
        	  networkfile           influence graph in SIF format
        	  observationfiles      directory of observations in bioquali format
        	
        	optional arguments:
        	  -h, --help            show this help message and exit
        	  --autoinputs          compute possible inputs of the network (nodes with
        				indegree 0)
        	  --show_repairs SHOW_REPAIRS
        				number of repairs to show, default is OFF, 0=all
        	  --opt_graph           compute opt-graph repairs (allows also adding edges),
        				default is only removing edges
        
        
        Samples
        =======
        
        Sample files available here:: iggy_demo_data.tar.gz_
        
        .. _iggy_demo_data.tar.gz: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/iggy_demo_data.tar.gz
        
Platform: UNKNOWN
