Metadata-Version: 1.0
Name: iggy
Version: 1dev
Summary: Influence graph analysis, consistency check, repair and prediction 
Home-page: http://pypi.python.org/pypi/iggy/
Author: Sven Thiele
Author-email: sthiele78@gmail.com
License: GPLv3+
Description: Installation
============


You can install iggy by running::

        $ pip install --user iggy

The executable scripts can then be found in ~/.local/bin.


Usage
=====

Typical usage is::

        $ iggy.py network.sif observation.obs --show_colorings 10

For more options you can ask for help as follows:

        $ iggy.py -h
        usage: iggy.py [-h] [--autoinputs] [--scenfit]
               [--show_colorings SHOW_COLORINGS] [--show_predictions]
               networkfile observationfile

        positional arguments:
          networkfile           influence graph in SIF format
          observationfile       observations in bioquali format

        optional arguments:
          -h, --help            show this help message and exit
          --autoinputs          compute possible inputs of the network (nodes with
                                indegree 0)
          --scenfit             compute scenfit of the data, default is mcos
          --show_colorings SHOW_COLORINGS
                                number of colorings to print, default is OFF, 0=all
          --show_predictions    show predictions


The second script contained is opt_graph.py
Typical usage is::

        $ opt_graph.py network.sif observations_dir/ --show_repairs 10

For more options you can ask for help as follows:

        $ opt_graph.py -h
        usage: opt_graph.py [-h] [--autoinputs] [--show_repairs SHOW_REPAIRS]
                            [--opt_graph]
                            networkfile observationfiles

        positional arguments:
          networkfile           influence graph in SIF format
          observationfiles      directory of observations in bioquali format

        optional arguments:
          -h, --help            show this help message and exit
          --autoinputs          compute possible inputs of the network (nodes with
                                indegree 0)
          --show_repairs SHOW_REPAIRS
                                number of repairs to show, default is OFF, 0=all
          --opt_graph           compute opt-graph repairs (allows also adding edges),
                                default is only removing edges


Samples
=======

Sample files available here:
        iggy_demo_data.tar.gz_

.. _iggy_demo_data.tar.gz: http://www.cs.uni-potsdam.de/~sthiele/bioasp/downloads/samples/iggy_demo_data.tar.gz

Platform: UNKNOWN
