Metadata-Version: 1.0
Name: ingranalyze
Version: 1.5.2
Summary: Influence graph analysis, consistency check, diagnosis, repair and prediction 
Home-page: http://pypi.python.org/pypi/ingranalyze/
Author: Sven Thiele
Author-email: sthiele78@gmail.com
License: GPLv3+
Description: Installation
        ============
        
        
        You can install ingranalyze by running::
        
        	$ pip install ingranalyze
        
        
        Usage
        =====
        
        Typical usage is::
        
        	$ ingranalyze.py --mics --repair 5 networkfile observationfile
        
        For more options you can ask for help as follows:
        
        	$ ingranalyze.py -h 
        	usage: ingranalyze.py [-h] [--mics] [--repair {1,2,3,4,5}] [--list_repairs] networkfile observationfile                                                          
        	
        	positional arguments:                                                                                      
        	  networkfile           influence graph in bioquali format                                                 
        	  observationfile       observations in bioquali format                                                    
        	
        	optional arguments:                                                                                        
        	  -h, --help            show this help message and exit                                                    
        	  --mics                compute minimal inconsistent cores
        	  --repair {1,2,3,4,5}  choose repair method: 1 flip observed variations, 2
        	                        flip influences, 3 define network nodes as inputs, 4
        	                        define network nodes as input in an experiment (use
        	                        only in case of multiple experiments), 5 add
        	                        influences. default is 3
        	  --list_repairs        compute all minimal repair sets
        
        
        Samples
        =======
        
        Sample files for yeast are available here:
        	yeast_guelzim.net_ yeast_snf2.obs_
        
        .. _yeast_guelzim.net: http://bioasp.github.io/downloads/samples/yeastdata/yeast_guelzim.net
        .. _yeast_snf2.obs: http://bioasp.github.io/downloads/samples/yeastdata/yeast_snf2.obs
        
Platform: UNKNOWN
