[ Identifiers | Term Definitions ]

Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

A

add_constraint() (in Query)	add_view() (in Query)	Attribute (in intermine.model)
add_join() (in Query)	append() (in List)	attributes (in Class)
add_path_description() (in Query)	append() (in SortOrderList)
add_sort_order() (in Query)	ASC (in SortOrder)

B

BinaryConstraint (in intermine.constraints)

C

check_return_status() (in JSONIterator)	clone() (in Query)	CONSTRAINT_CLASSES (in TemplateConstraintFactory)
check_syntax() (in LogicParser)	coded_constraints (in Query)	ConstraintError (in intermine.query)
child_type (in Constraint)	CodedConstraint (in intermine.constraints)	ConstraintFactory (in intermine.constraints)
child_type (in Join)	Collection (in intermine.model)	constraints (in intermine)
child_type (in PathDescription)	collections (in Class)	constraints (in Query)
child_type (in PathFeature)	Column (in intermine.model)	count() (in Query)
children() (in Query)	column() (in Model)	count() (in Template)
Class (in intermine.model)	column() (in Query)	create_list() (in ListManager)
clear() (in SortOrderList)	Constraint (in intermine.constraints)
clear_view() (in Query)	CONSTRAINT_CLASSES (in ConstraintFactory)

D

DEFAULT_DESCRIPTION (in ListManager)	delete() (in InterMineURLOpener)	DictValueParser (in intermine.webservice)
DEFAULT_LIST_NAME (in ListManager)	delete_lists() (in ListManager)	DIFFERENCE_PATH (in ListManager)
del_name() (in List)	delete_temporary_lists() (in ListManager)	DIRECTIONS (in SortOrder)
delete() (in List)	DESC (in SortOrder)

E

EchoParser (in intermine.webservice)	end (in Path)
editable_constraints (in Template)	end_class (in Path)

F

Field (in intermine.model)	first() (in Query)	from_xml() (in Query)
fields (in Class)	FlatFileIterator (in intermine.webservice)

G

get_adjusted_template() (in Template)	get_list() (in ListManager)	get_results_list() (in Query)
get_all_list_names() (in ListManager)	get_list_append_uri() (in Query)	get_results_list() (in Template)
get_all_lists() (in ListManager)	get_list_count() (in ListManager)	get_results_path() (in Query)
get_class() (in Model)	get_list_upload_uri() (in Query)	get_results_path() (in Template)
get_class() (in Path)	get_logic() (in Query)	get_sort_order() (in Query)
get_codes() (in LogicGroup)	get_name() (in List)	get_subclass_dict() (in Query)
get_constraint() (in LogicParser)	get_next_code() (in ConstraintFactory)	get_switchable_status() (in TemplateConstraint)
get_constraint() (in Query)	get_next_row_from_connection() (in JSONIterator)	get_template() (in Service)
get_default_sort_order() (in Query)	get_priority() (in LogicParser)	get_unused_list_name() (in ListManager)
get_field() (in Class)	get_results() (in Service)

H

http_error_400() (in InterMineURLOpener)	http_error_404() (in InterMineURLOpener)	http_error_default() (in InterMineURLOpener)
http_error_401() (in InterMineURLOpener)	http_error_500() (in InterMineURLOpener)

I

infix_to_postfix() (in LogicParser)	intersect() (in ListManager)	is_empty() (in SortOrderList)
INNER (in Join)	INTERSECTION_PATH (in ListManager)	is_reference() (in Path)
intermine	is_attribute() (in Path)	isa() (in Class)
InterMineURLOpener (in intermine.webservice)	is_class() (in Path)

J

Join (in intermine.pathfeatures)	JSON_FORMATS (in ResultIterator)	JSONIterator (in intermine.webservice)

L

l() (in ListManager)	LIST_PATH (in Service)	ListValueParser (in intermine.webservice)
LEGAL_OPS (in LogicGroup)	LIST_RENAME_PATH (in Service)	LogicGroup (in intermine.constraints)
list (in intermine.lists)	ListConstraint (in intermine.constraints)	LogicNode (in intermine.constraints)
List (in intermine.lists.list)	listmanager (in intermine.lists)	LogicParseError (in intermine.constraints)
LIST_APPENDING_PATH (in Service)	ListManager (in intermine.lists.listmanager)	LogicParser (in intermine.constraints)
LIST_CREATION_PATH (in Service)	lists (in intermine)	LoopConstraint (in intermine.constraints)
LIST_MANAGER_METHODS (in Service)	ListServiceError (in intermine.lists.listmanager)

M

make_constraint() (in ConstraintFactory)	Model (in intermine.model)	ModelParseError (in intermine.model)
make_list_names() (in ListManager)	model (in Service)	MultiConstraint (in intermine.constraints)
make_path() (in Model)	MODEL_PATH (in Service)
model (in intermine)	ModelError (in intermine.model)

N

name (in List)	next() (in SortOrderList)	next() (in JSONIterator)
new_query() (in Service)	next() (in FlatFileIterator)	next() (in ResultIterator)

O

one() (in Query)	OPS (in ListConstraint)	OPS (in UnaryConstraint)
open() (in InterMineURLOpener)	ops (in LogicParser)	OPTIONAL_OFF (in TemplateConstraint)
openAnything() (in intermine.util)	OPS (in LoopConstraint)	OPTIONAL_ON (in TemplateConstraint)
OPS (in BinaryConstraint)	OPS (in MultiConstraint)	OUTER (in Join)
OPS (in CodedConstraint)	OPS (in TernaryConstraint)	outerjoin() (in Query)

P

parse() (in LogicParser)	parse_list_upload_response() (in ListManager)	PathFeature (in intermine.pathfeatures)
parse() (in DictValueParser)	parse_model() (in Model)	pathfeatures (in intermine)
parse() (in EchoParser)	parse_path_string() (in Model)	PathParseError (in intermine.model)
parse() (in ListValueParser)	PARSED_FORMATS (in ResultIterator)	PATTERN_STR (in intermine.pathfeatures)
parse() (in Parser)	Parser (in intermine.webservice)	post_plain_text() (in InterMineURLOpener)
parse() (in ResultObjParser)	Path (in intermine.model)	postfix_to_tree() (in LogicParser)
parse() (in ResultRowParser)	PATH_PATTERN (in intermine.pathfeatures)	prefix_path() (in Query)
parse_header() (in JSONIterator)	PathDescription (in intermine.pathfeatures)	prepare_url() (in InterMineURLOpener)

Q

query (in intermine)	QUERY_LIST_UPLOAD_PATH (in Service)	QueryParseError (in intermine.query)
Query (in intermine.query)	QUERY_PATH (in Service)
QUERY_LIST_APPEND_PATH (in Service)	QueryError (in intermine.query)

R

ReadableException (in intermine.util)	REQUIRED (in TemplateConstraint)	ResultRowParser (in intermine.webservice)
Reference (in intermine.model)	required (in TemplateConstraint)	results() (in Query)
references (in Class)	ResultIterator (in intermine.webservice)	results() (in Template)
refresh_lists() (in ListManager)	ResultObject (in intermine.webservice)	root (in Path)
release (in Service)	ResultObjParser (in intermine.webservice)	ROW_FORMATS (in ResultIterator)
RELEASE_PATH (in Service)	ResultRow (in intermine.webservice)

S

safe_dict() (in ListManager)	Service (in intermine.webservice)	STRING_FORMATS (in ResultIterator)
SAVEDQUERY_PATH (in Service)	ServiceError (in intermine.webservice)	SubClassConstraint (in intermine.constraints)
SCHEME (in Service)	set_logic() (in Query)	subtract() (in ListManager)
select() (in Column)	set_name() (in List)	SUBTRACTION_PATH (in ListManager)
separate_arg_sets() (in TemplateConstraint)	SortOrder (in intermine.pathfeatures)	switched_off (in TemplateConstraint)
SERIALISED_OPS (in LoopConstraint)	SortOrderList (in intermine.pathfeatures)

T

Template (in intermine.query)	to_dict() (in CodedConstraint)	to_string() (in MultiConstraint)
TemplateBinaryConstraint (in intermine.constraints)	to_dict() (in ListConstraint)	to_string() (in SubClassConstraint)
TemplateConstraint (in intermine.constraints)	to_dict() (in LoopConstraint)	to_string() (in TemplateBinaryConstraint)
TemplateConstraintFactory (in intermine.constraints)	to_dict() (in MultiConstraint)	to_string() (in TemplateConstraint)
TemplateListConstraint (in intermine.constraints)	to_dict() (in SubClassConstraint)	to_string() (in TemplateListConstraint)
TemplateLoopConstraint (in intermine.constraints)	to_dict() (in TernaryConstraint)	to_string() (in TemplateLoopConstraint)
TemplateMultiConstraint (in intermine.constraints)	to_dict() (in Join)	to_string() (in TemplateMultiConstraint)
TEMPLATEQUERY_PATH (in Service)	to_dict() (in PathDescription)	to_string() (in TemplateSubClassConstraint)
templates (in Service)	to_dict() (in PathFeature)	to_string() (in TemplateTernaryConstraint)
TEMPLATES_PATH (in Service)	to_formatted_xml() (in Query)	to_string() (in TemplateUnaryConstraint)
TemplateSubClassConstraint (in intermine.constraints)	to_l() (in ResultRow)	to_string() (in TernaryConstraint)
TemplateTernaryConstraint (in intermine.constraints)	to_Node() (in Query)	to_string() (in PathFeature)
TemplateUnaryConstraint (in intermine.constraints)	to_query() (in List)	to_string() (in SortOrder)
TernaryConstraint (in intermine.constraints)	to_query_params() (in Query)	to_xml() (in Query)
to_ancestry() (in Model)	to_query_params() (in Template)	toString() (in Collection)
to_attribute_query() (in List)	to_string() (in BinaryConstraint)	toString() (in Field)
to_classes() (in Model)	to_string() (in CodedConstraint)	toString() (in Reference)
to_d() (in ResultRow)	to_string() (in ListConstraint)
to_dict() (in BinaryConstraint)	to_string() (in LoopConstraint)

U

UnaryConstraint (in intermine.constraints)	union() (in ListManager)	USER_AGENT (in Service)
UnimplementedError (in intermine.webservice)	UNION_PATH (in ListManager)	util (in intermine)

V

valid_join_styles (in Join)	verify_constraint_paths() (in Query)	version (in Service)
validate_logic() (in Query)	verify_join_paths() (in Query)	VERSION_PATH (in Service)
validate_path() (in Model)	verify_pd_paths() (in Query)	vivify() (in Model)
validate_sort_order() (in Query)	verify_views() (in Query)
verify() (in Query)	version (in InterMineURLOpener)

W

webservice (in intermine)	WebserviceError (in intermine.webservice)	where() (in Query)

X

xor() (in ListManager)

_

__add__() (in LogicNode)	__init__() (in Field)	__organization__ (in intermine.query)
__add__() (in List)	__init__() (in Model)	__organization__ (in intermine.webservice)
__and__() (in LogicNode)	__init__() (in ModelParseError)	__package__ (in intermine)
__and__() (in List)	__init__() (in Path)	__package__ (in intermine.constraints)
__del__() (in Service)	__init__() (in Reference)	__package__ (in intermine.lists)
__eq__() (in Column)	__init__() (in Join)	__package__ (in intermine.lists.list)
__ge__() (in Column)	__init__() (in PathDescription)	__package__ (in intermine.lists.listmanager)
__getattr__() (in Column)	__init__() (in PathFeature)	__package__ (in intermine.model)
__getattr__() (in Model)	__init__() (in SortOrder)	__package__ (in intermine.pathfeatures)
__getattr__() (in ResultObject)	__init__() (in SortOrderList)	__package__ (in intermine.query)
__getattr__() (in Service)	__init__() (in Query)	__package__ (in intermine.util)
__getattribute__() (in Service)	__init__() (in Template)	__package__ (in intermine.webservice)
__getitem__() (in ResultRow)	__init__() (in ReadableException)	__repr__() (in LogicGroup)
__gt__() (in Column)	__init__() (in FlatFileIterator)	__repr__() (in Class)
__iadd__() (in List)	__init__() (in InterMineURLOpener)	__repr__() (in Path)
__iand__() (in List)	__init__() (in JSONIterator)	__repr__() (in Join)
__init__() (in BinaryConstraint)	__init__() (in Parser)	__repr__() (in PathFeature)
__init__() (in CodedConstraint)	__init__() (in ResultIterator)	__repr__() (in SortOrderList)
__init__() (in ConstraintFactory)	__init__() (in ResultObjParser)	__rshift__() (in Column)
__init__() (in ListConstraint)	__init__() (in ResultObject)	__str__() (in CodedConstraint)
__init__() (in LogicGroup)	__init__() (in ResultRow)	__str__() (in LogicGroup)
__init__() (in LogicParser)	__init__() (in Service)	__str__() (in List)
__init__() (in LoopConstraint)	__isub__() (in List)	__str__() (in Column)
__init__() (in MultiConstraint)	__iter__() (in SortOrderList)	__str__() (in Field)
__init__() (in SubClassConstraint)	__iter__() (in Query)	__str__() (in ModelParseError)
__init__() (in TemplateBinaryConstraint)	__iter__() (in FlatFileIterator)	__str__() (in Path)
__init__() (in TemplateConstraint)	__iter__() (in JSONIterator)	__str__() (in SortOrder)
__init__() (in TemplateListConstraint)	__iter__() (in ResultIterator)	__str__() (in SortOrderList)
__init__() (in TemplateLoopConstraint)	__iter__() (in ResultRow)	__str__() (in ReadableException)
__init__() (in TemplateMultiConstraint)	__ixor__() (in List)	__str__() (in ResultRow)
__init__() (in TemplateSubClassConstraint)	__le__() (in Column)	__sub__() (in List)
__init__() (in TemplateTernaryConstraint)	__len__() (in ResultRow)	__xor__() (in List)
__init__() (in TemplateUnaryConstraint)	__lt__() (in Column)	_add_failed_matches() (in List)
__init__() (in TernaryConstraint)	__mod__() (in Column)	_do_append() (in List)
__init__() (in List)	__ne__() (in Column)	_do_operation() (in ListManager)
__init__() (in ListManager)	__or__() (in LogicNode)	_get_index_for() (in ResultRow)
__init__() (in Class)	__or__() (in List)
__init__() (in Column)	__organization__ (in intermine.model)