2013-10-21  Michael R. Crusoe  <mcrusoe@msu.edu>

* Version 0.7

* New script: sample-reads-randomly.py which does a single pass random
subsample using reservoir sampling.

* the version number is now only stored in one place

* Makefile: new dist, cppcheck, pep8, and autopep8 targets for developers.
VERSION is now set by versioneer and exported to C/C++ code.

* README switched from MarkDown to ReStructuredText format to clean up PyPI
listing. Install count badge added.

* doc/: updates to how the scripts are called. Sphinx now pulls version
number from versioneer. C/Python integration is now partially documented.
Reference to bleeding-edge has been removed. Release instructions have been
clarified and simplified.

* all python code in khmer/, scripts/, and tests/ should be PEP8 compliant now.

* khmer/_khmermodule.cc has gotten a once-over with cpychecker. Type errors
were eliminated and the error checking has improved.

* Several fixes motivated by the results of a Coverity C/C++ scan. 

* Tests that require greater than 0.5 gigabytes of memory are now annotated as
being 'highmem' and be skipped by changing two lines in setup.cfg

* warnings about -Wstrict-prototypes will no longer appear

* contributors to this release are: ctb, mr-c and cswelcher. 

2013-10-15  Michael R. Crusoe  <mcrusoe@msu.edu>

* Version 0.6.1

* No code changes, just build fixes

2013-10-10  Michael R. Crusoe  <mcrusoe@msu.edu>

* Version 0.6

* Switch to setuptools to run the entire build

* The various Makefiles have been merged into one inside lib for posterity

* A new top-level Makefile wraps "python setup.py"

* argparse.py has been removed and is installed automatically by setuptools/pip

* setup.py and the python/khmer directory have been moved to the root of the
project to conform to the standard layout

* The project contact address is now khmer-project@idyll.org

* Due to the new build system the project now easily builds under OS X + XCode

* In light of the above the installation instructions have been rewritten

* Sphinx now builds the documentation without warnings or errors

* It is now easy to calculate code coverage.

* setup.py is now PEP8 compliant
