lingpy.align.sca.MSA
====================

.. currentmodule:: lingpy.align.sca

.. autoclass:: MSA

.. HACK::  
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~MSA.__init__
      ~MSA.get_pairwise_alignments
      ~MSA.get_peaks
      ~MSA.get_pid
      ~MSA.ipa2cls
      ~MSA.iterate_all_sequences
      ~MSA.iterate_clusters
      ~MSA.iterate_orphans
      ~MSA.iterate_similar_gap_sites
      ~MSA.lib_align
      ~MSA.output
      ~MSA.prog_align
      ~MSA.sum_of_pairs
      ~MSA.swap_check
   
   

   
   
   
