Metadata-Version: 1.0
Name: nebfa
Version: 0.0.1
Summary: Fasta file parser.
Home-page: http://github.com/davisp/nebgb
Author: Paul Joseph Davis
Author-email: davisp@neb.com
License: MIT
Description: nebfa - Fasta File Parser
        =========================
        
        Usage:
        
        >>> import nebfa
        >>> rec = nebfa.parse(open("./test/data/basic.fa")).next()
        >>> rec.id
        ('gi', '0120123123')
        >>> rec.desc
        'Some stuff'
        >>> rec.sequence
        'ACGT'
        >>> rec.hash
        '2108994E17F6CCA9FF2352ADA92B6511DB076034'
        
        # Alternatively, parse_file avoids the need for a call to open.
        >>> for rec in nebfa.parse_file("./test/data/multi.fa"):
        ...     print rec.id
        ('gi', '0120123123')
        ('ref', 'YP_234234.2')
        
        Records also have a meta attribute that has two keys for identifiers and
        descriptions. You will need to consult that member when you have Ctl-A separated
        deflines. If you have a better syntax suggestion please send a note along.
        
Keywords: bioinformatics fasta parser
Platform: any
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
