Metadata-Version: 1.0
Name: nebgbhist
Version: 0.0.4
Summary: Annotation histories from Genbank files.
Home-page: http://github.com/davisp/nebgbhist
Author: Paul Joseph Davis
Author-email: davisp@neb.com
License: MIT
Description: nebgbhist
        =========
        
        Tools for building annotation histories from multiple Genbank files.
        
        Example
        =======
        
        $ mkdir gbhist
        $ neb-rev-fetch -d gbhist NC_008512
        $ neb-gbhist -d gbhist | neb-diff-apply NC_008512.git
        $ git --git-dir=NC_008512.git gc --aggressive
        $ neb-validate-history -p NC_008512.git -g gbhist/2009-04-29-04-04.gbk
        
        Playing with files
        ==================
        
        If you clone the pack repository after building you can poke around at the
        contents on the file system. For larger genomes with lots of edits this may run
        afoul of directory entry limits until I rewrite the object storage. For the
        Carsonella (NC_008512) example I use there isn't an issue.
        
        $ git clone NC_008512.git
        $ cd NC_008512
        $ ls -1
        *files*
        
        
Keywords: bioinformatics Genbank annotation history
Platform: any
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
