Metadata-Version: 1.1
Name: ngcloud
Version: 0.3.3
Summary: NGCloud result parser
Home-page: https://github.com/BioCloud-TW/ngcloud
Author: Liang Bo Wang
Author-email: r02945054@ntu.edu.tw
License: MIT
Description: *******
        NGCloud
        *******
        
        Documentation: http://ngcloud.readthedocs.org/
        
        Requires Python 3.3+
        
        
        Installation
        ============
        
        Through *pip*. For latest stable release,
        
        ::
        
            pip install ngcloud
        
        
        Build from source
        -----------------
        
        Node.js_ and npm_ are required to set up the frontend
        development environment.
        
        .. code-block:: bash
        
            git clone https://github.com/BioCloud-TW/ngcloud.git
            cd template_dev
            npm install
            npm install -g gulp
        
            cd ..  # back to ngcloud source root
            python setup.py install
        
        .. _pathlib: https://pypi.python.org/pypi/pathlib
        .. _node.js: http://nodejs.org/
        .. _npm: https://www.npmjs.org
        
        =======
        CHANGES
        =======
        
        -----
        0.3.3
        -----
        
        - API CHANGE: now Stage.parse() is handled by Report.parse().
          Outcome behavior should remain the same
        - Subclass SummaryStage from Stage.
          It can access normal stages' result_info in its result_info (#18)
        - Add true functionality of Cufflinks page (#19)
        - Fix py3.3 wheel dependencies
        - Move change log before 0.3 to OLDCHANGES.rst
        
        -----
        0.3.2
        -----
        
        - Add true functionality of Tophat page (#17)
        - More unified result structure (#13, #14)
        - Add doc for Tuxedo pipeline (#16)
        
        -----
        0.3.1
        -----
        
        - Add true funcionality of FastQC page (finally)
        - Change templates' internal folder structure.
          Backward compatible but internal API has changed
          (e.g. _get_builtin_template_root -> _get_builtin_report_root)
        - jQuery v2.1.1 now bundles in NGCloud
        - Re-design frontend development (e.g. gulpfile.coffee)
        - Improve Report.copy_static() function
        - Make easier for external loggers embedded into ngreport
        - Fix tuxedo template path priority and its block layout, CSS
        - Fix result folder finding without digit prefix
        
        ---
        0.3
        ---
        
        - Use Gulp.js for frontend development (#11)
        - No pathlib required during installation (#12)
        - Add API for stage static file copying (#8)
        
        Older changes can be found in OLDCHANGES.rst
        
Keywords: ngs
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
