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nipype.interfaces.camino2trackvis.convert
=========================================


:class:`Camino2Trackvis`
------------------------


Wraps command **camino_to_trackvis**

Wraps camino_to_trackvis from Camino-Trackvis

Convert files from camino .Bfloat format to trackvis .trk format.

Example
~~~~~~~

>>> import nipype.interfaces.camino2trackvis as cam2trk
>>> c2t = cam2trk.Camino2Trackvis()
>>> c2t.inputs.in_file = 'data.Bfloat'
>>> c2t.inputs.out_file = 'streamlines.trk'
>>> c2t.inputs.min_length = 30
>>> c2t.inputs.data_dims = [128, 104, 64]
>>> c2t.inputs.voxel_dims = [2.0, 2.0, 2.0]
>>> c2t.inputs.voxel_order = 'LAS'
>>> c2t.run()                  # doctest: +SKIP

Inputs:: 

	[Mandatory]
	data_dims : (a list of from 3 to 3 items which are an integer)
		Three comma-separated integers giving the number of voxels along each dimension of the source scans.
	in_file : (an existing file name)
		The input .Bfloat (camino) file.
	voxel_dims : (a list of from 3 to 3 items which are a float)
		Three comma-separated numbers giving the size of each voxel in mm.
	voxel_order : (a file name)
		Set the order in which various directions were stored.        Specify with three letters consisting of one each          from the pairs LR, AP, and SI. These stand for Left-Right,         Anterior-Posterior, and Superior-Inferior.          Whichever is specified in each position will          be the direction of increasing order.          Read coordinate system from a NIfTI file.

	[Optional]
	args : (a string)
		Additional parameters to the command
	environ : (a dictionary with keys which are a value of type 'str' and with values which are a value of type 'str')
		Environment variables
	ignore_exception : (a boolean)
		Print an error message instead of throwing an exception in case the interface fails to run
	min_length : (a float)
		The minimum length of tracts to output
	nifti_file : (an existing file name)
		Read coordinate system from a NIfTI file.
	out_file : (a file name)
		The filename to which to write the .trk (trackvis) file.


Outputs:: 

	trackvis : (an existing file name)
		The filename to which to write the .trk (trackvis) file.

:class:`Trackvis2Camino`
------------------------


Wraps command **trackvis_to_camino**



Inputs:: 

	[Mandatory]
	in_file : (an existing file name)
		The input .trk (trackvis) file.

	[Optional]
	append_file : (an existing file name)
		A file to which the append the .Bfloat data. 
	args : (a string)
		Additional parameters to the command
	environ : (a dictionary with keys which are a value of type 'str' and with values which are a value of type 'str')
		Environment variables
	ignore_exception : (a boolean)
		Print an error message instead of throwing an exception in case the interface fails to run
	out_file : (a file name)
		The filename to which to write the .Bfloat (camino).


Outputs:: 

	camino : (an existing file name)
		The filename to which to write the .Bfloat (camino).
