.. AUTO-GENERATED FILE -- DO NOT EDIT!

interfaces.slicer.registration.brainsresample
=============================================


.. _nipype.interfaces.slicer.registration.brainsresample.BRAINSResample:


.. index:: BRAINSResample

BRAINSResample
--------------

`Link to code <http://github.com/nipy/nipype/tree/9595f272aa4086ea28f7534a8bd05690f60bf6b8/nipype/interfaces/slicer/registration/brainsresample.py#L27>`__

Wraps command **BRAINSResample **

title: Resample Image (BRAINS)

category: Registration

description:
   This program resamples an image image using a deformation field or a transform (BSpline, Affine, Rigid, etc.).


version: 3.0.0

documentation-url: http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSResample

license: https://www.nitrc.org/svn/brains/BuildScripts/trunk/License.txt

contributor: This tool was developed by Vincent Magnotta, Greg Harris, and Hans Johnson.

acknowledgements: The development of this tool was supported by funding from grants NS050568 and NS40068 from the National Institute of Neurological Disorders and Stroke and grants MH31593, MH40856, from the National Institute of Mental Health.

Inputs::

        [Mandatory]
        terminal_output: ('stream' or 'allatonce' or 'file' or 'none')
                Control terminal output

        [Optional]
        args: (a string)
                Additional parameters to the command
        defaultValue: (a float)
                Default voxel value
        deformationVolume: (an existing file name)
                Displacement Field to be used to warp the image
        environ: (a dictionary with keys which are a value of type 'str' and with values which
                 are a value of type 'str', nipype default value: {})
                Environment variables
        gridSpacing: (an integer)
                Add warped grid to output image to help show the deformation that occured with specified
                spacing.   A spacing of 0 in a dimension indicates that grid lines should be rendered to
                fall exactly (i.e. do not allow displacements off that plane).  This is useful for
                makeing a 2D image of grid lines from the 3D space
        ignore_exception: (a boolean, nipype default value: False)
                Print an error message instead of throwing an exception in case the interface fails to
                run
        inputVolume: (an existing file name)
                Image To Warp
        interpolationMode: ('NearestNeighbor' or 'Linear' or 'ResampleInPlace' or 'BSpline' or
                 'WindowedSinc' or 'Hamming' or 'Cosine' or 'Welch' or 'Lanczos' or 'Blackman')
                Type of interpolation to be used when applying transform to moving volume.  Options are
                Linear, ResampleInPlace, NearestNeighbor, BSpline, or WindowedSinc
        inverseTransform: (a boolean)
                True/False is to compute inverse of given transformation. Default is false
        numberOfThreads: (an integer)
                Explicitly specify the maximum number of threads to use.
        outputVolume: (a boolean or a file name)
                Resulting deformed image
        pixelType: ('float' or 'short' or 'ushort' or 'int' or 'uint' or 'uchar' or 'binary')
                Specifies the pixel type for the input/output images.  The 'binary' pixel type uses a
                modified algorithm whereby the image is read in as unsigned char, a signed distance map
                is created, signed distance map is resampled, and then a thresholded image of type
                unsigned char is written to disk.
        referenceVolume: (an existing file name)
                Reference image used only to define the output space. If not specified, the warping is
                done in the same space as the image to warp.
        warpTransform: (an existing file name)
                Filename for the BRAINSFit transform used in place of the deformation field

Outputs::

        outputVolume: (an existing file name)
                Resulting deformed image
