
NxRepair
========

NxRepair is an automated error detection tool for use with de novo assemblies from Nextera mate pair data.

We have a tutorial_ and API on ReadTheDocs_

.. _tutorial: http://nxrepair.readthedocs.org/

.. _ReadTheDocs: https://readthedocs.org/

To get started, here's how to use NxRepair (more details, caveats and options in the tutorial_):

.. _tutorial: http://nxrepair.readthedocs.org/

.. code-block:: bash

    nxrepair aligned_matepairs.bam assemblyfasta.fasta error_locations.csv new_fasta.fasta	