Metadata-Version: 1.0
Name: oldowan.polymorphism
Version: 1.0.1
Summary: Utilities for the management of molecular polymorphism data.

Home-page: http://www.raaum.org/software/oldowan
Author: Ryan Raaum
Author-email: code@raaum.org
License: MIT
Description: oldowan.polymorphism is a small bioinformatic utility for the management
        of molecular polymorphism data.
        
        Installation Instructions
        =========================
        
        This package is pure Python and has no dependencies outside of the standard
        library. The easist way to install is using ``easy_install`` from the
        setuptools_ package.  This usually goes something like this::
        
        $ easy_install oldowan.polymorphism
        
        or on a unix-like system, assuming you are installing to the main Python
        ``site-packages`` directory as a non-privileged user, this::
        
        $ sudo easy_install oldowan.polymorphism
        
        You may also use the standard python distutils setup method. Download the
        current source archive from the file list towards the bottom of this page,
        unarchive it, and install. On Mac OS X and many other unix-like systems, having
        downloaded the archive and changed to the directory containing this archive in
        your shell, this might go something like::
        
        $ tar xvzf oldowan.polymorphism*
        $ cd oldowan.polymorphism*
        $ python setup.py install
        
        Quick Start
        ===========
        
        This package provides a single utility class, ``Polymorphism``. Import
        this class from oldowan.polymorphism::
        
        >>> from oldowan.polymorphism import Polymorphism
        
        Create a new Polymorphism object::
        
        >>> p1 = Polymorphism(16223,0,'A','T')
        
        The Polymorphism constructor requires 3 arguments and accepts and optional
        fourth argument. These are (in order):
        
        1. ``position``, integer.
        2. ``insert``, 0 if polymorphism is exactly at that position, or 1,2,3,... if
        insertion after.
        3. ``value``, character value of polymorphism
        4. ``reference``, optional value of a reference sequence at that position
        
        
        Release History
        ===============
        
        1.0.0 (March 25, 2009)
        initial release of module.
        
        1.0.1 (March 25, 2009)
        minor update for correct version numbering
        
        .. _setuptools: http://peak.telecommunity.com/DevCenter/EasyInstall
        
Platform: Any
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
