Metadata-Version: 1.0
Name: omics_pipe
Version: 1.1.3
Summary: Extensible computational pipeline for running next generation sequencing analyses
Home-page: https://bitbucket.org/sulab/omics_pipe
Author: Kathleen Fisch, Ph.D.
Author-email: kfisch@scripps.edu
License: MIT
Download-URL: http://pypi.python.org/pypi/omics_pipe
Description: Omics pipe is an open-source, modular computational platform that automates best practice multi-omics data analysis pipelines published in Nature Protocols and other commonly used pipelines, such as GATK.  It currently automates and provides summary reports for two RNAseq and miRNAseq pipelines, variant calling from whole exome sequencing (WES), variant calling and copy  number variation analysis from whole genome sequencing (WGS), two ChIPseq pipelines and a custom RNAseq pipeline for personalized genomic medicine reporting.  It also provides automated support for interacting with the The Cancer Genome Atlas (TCGA) datasets, including automatic download and processing of the samples in this database.
Keywords: biology omics transcriptomics pipeline RNA-seq ChIP-seq WGS WES genome exome HPC
Platform: UNKNOWN
Classifier: Programming Language :: Python
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: POSIX
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
