To run each of the example systems, go into the folder and run "sh
command.sh".  Note that this requires the newest development build of OpenMM
as of August 11, 2013.

1) Example PDB with AMBER
2) Example PDB with AMOEBA
3) Example PDB with system XML
4) Example PDB with restart file
5) iAMOEBA water box
6) Acetophenone in AMOEBA water with system XML
7) DHFR in explicit solvent
8) DHFR in implicit solvent
9) iAMOEBA ice-water interface with anisotropic barostat (requires latest OpenMM development version)
10) Cox2 protein in implicit solvent, taken from AMBER examples.
