Metadata-Version: 1.1
Name: pyEMMA
Version: v1.0a1-19-g983f910
Summary: EMMA: Emma's Markov Model Algorithms
Home-page: http://compmolbio.biocomputing-berlin.de/index.php
Author: Martin K. Scherer
Author-email: m.scherer@fu-berlin.de
License: FreeBSD
Description: =====================================
        EMMA (Emma's Markov Model Algorithms)
        =====================================
        
        What is it?
        -----------
        EMMA is an open source collection of algorithms implemented mostly in
        `NumPy <http://www.numpy.org/>`_ and `SciPy <http://www.scipy.org>`_ to analyze
        trajectories generated from any kind of simulation (e.g. molecular
        trajectories) via Markov state models (MSM).
        
        It provides APIs for estimation and analyzing MSM and various utilities to
        process input data (clustering, coordinate transformations etc). For
        documentation of the API, please have a look at the sphinx docs in doc
        directory or `online <http://pythonhosted.org/pyEMMA/api/index.html>`__.
        
        For some examples on how to apply the software, please have a look in the
        ipython directory, which shows the most common use cases as documentated
        IPython notebooks.
        
        Installation
        ------------
        To install it refer to the installation guide
        `online <http://pythonhosted.org/pyEMMA/INSTALL.html>`__ or or offline in file
        doc/source/INSTALL.rst
        
        Support
        -------
        For support/bug reports/sugguestions/complains please file an issue on GitHub.
        http://github.com/cmb-fu/emma
        
        
Keywords: Markov State Model Algorithms
Platform: Windows
Platform: Linux
Platform: Solaris
Platform: Mac OS-X
Platform: Unix
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Environment :: MacOS X
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX
Classifier: Programming Language :: Python :: 2.6
Classifier: Programming Language :: Python :: 2.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Chemistry
Classifier: Topic :: Scientific/Engineering :: Mathematics
Classifier: Topic :: Scientific/Engineering :: Physics
Requires: numpy
Requires: scipy
Requires: pystallone
