.gitignore
LICENSE
MANIFEST.in
README
ez_setup.py
setup.py
examples/SIR_enkf.py
examples/SIR_enkf2horizon.py
examples/SIR_enks.py
examples/SIR_enks2horizon.py
examples/SIR_enks_init2horizon.py
examples/SIR_inflation_enkf.py
examples/SIR_naivePF.py
examples/plotSIR_enkf.py
examples/data/SIR_incidence_data.dat
examples/data/SIRdata.dat
examples/data/SIRsampleparams.dat
examples/figures/SIR_enkf.png
examples/figures/SIR_enkf_KL_gll_2.png
examples/figures/SIR_enkf_inflation.png
examples/figures/enkf.gif
pyda/__init__.py
pyda.egg-info/PKG-INFO
pyda.egg-info/SOURCES.txt
pyda.egg-info/dependency_links.txt
pyda.egg-info/top_level.txt
pyda/analysis_generator/__init__.py
pyda/analysis_generator/analysis_generator_class.py
pyda/analysis_generator/kf/__init__.py
pyda/analysis_generator/kf/enkf1.py
pyda/analysis_generator/kf/enkf1_inflation.py
pyda/analysis_generator/pf/__init__.py
pyda/analysis_generator/pf/pf_naive.py
pyda/assimilation/__init__.py
pyda/assimilation/assimilation_current.py
pyda/assimilation/assimilation_current2horizon.py
pyda/assimilation/assimilation_init2horizon_smoother.py
pyda/assimilation/assimilation_smoother.py
pyda/assimilation/assimilation_smoother2horizon.py
pyda/assimilation/data_assimilation_class.py
pyda/ensemble_generator/SIRensemble.py
pyda/ensemble_generator/__init__.py
pyda/ensemble_generator/ensemble_generator_class.py
pyda/utilities/AssimilationVis.py
pyda/utilities/DA_quant.py
pyda/utilities/__init__.py
pyda/utilities/epiODElib.py