INSTALL.md
LICENSE
MANIFEST.in
README.md
setup.py
qiita_core/__init__.py
qiita_core/configuration_manager.py
qiita_core/environment_manager.py
qiita_core/exceptions.py
qiita_core/qiita_settings.py
qiita_core/util.py
qiita_core/support_files/config_test.txt
qiita_db/__init__.py
qiita_db/analysis.py
qiita_db/base.py
qiita_db/commands.py
qiita_db/data.py
qiita_db/environment_manager.py
qiita_db/exceptions.py
qiita_db/investigation.py
qiita_db/job.py
qiita_db/logger.py
qiita_db/meta_util.py
qiita_db/metadata_template.py
qiita_db/ontology.py
qiita_db/parameters.py
qiita_db/reference.py
qiita_db/search.py
qiita_db/sql_connection.py
qiita_db/study.py
qiita_db/user.py
qiita_db/util.py
qiita_db/support_files/populate_test_db.sql
qiita_db/support_files/qiita-db-settings.sql
qiita_db/support_files/qiita-db-unpatched.dbs
qiita_db/support_files/qiita-db-unpatched.sql
qiita_db/support_files/qiita-db.dbs
qiita_db/support_files/qiita-db.html
qiita_db/support_files/patches/.gitignore
qiita_db/support_files/patches/0.sql
qiita_db/support_files/patches/1.sql
qiita_db/support_files/patches/2.sql
qiita_db/support_files/patches/3.sql
qiita_db/support_files/patches/4.sql
qiita_db/support_files/patches/5.sql
qiita_db/support_files/patches/6.sql
qiita_db/support_files/patches/7.sql
qiita_db/support_files/patches/python_patches/.gitignore
qiita_db/support_files/patches/python_patches/6.py
qiita_db/support_files/patches/python_patches/7.py
qiita_db/support_files/test_data/analysis/1_analysis_18S.biom
qiita_db/support_files/test_data/analysis/1_analysis_mapping.txt
qiita_db/support_files/test_data/job/1_job_result.txt
qiita_db/support_files/test_data/job/2_test_folder/testfile.txt
qiita_db/support_files/test_data/preprocessed_data/seqs.fna
qiita_db/support_files/test_data/preprocessed_data/seqs.qual
qiita_db/support_files/test_data/processed_data/1_study_1001_closed_reference_otu_table.biom
qiita_db/support_files/test_data/raw_data/s_G1_L001_sequences.fastq.gz
qiita_db/support_files/test_data/raw_data/s_G1_L001_sequences_barcodes.fastq.gz
qiita_db/support_files/test_data/reference/GreenGenes_13_8_97_otu_taxonomy.txt
qiita_db/support_files/test_data/reference/GreenGenes_13_8_97_otus.fasta
qiita_db/support_files/test_data/reference/GreenGenes_13_8_97_otus.tree
qiita_db/support_files/test_data/reference/params_qiime.txt
qiita_db/support_files/test_data/templates/1_19700101-000000.txt
qiita_db/support_files/test_data/templates/1_prep_1_qiime_19700101-000000.txt
qiita_db/support_files/test_data/uploads/1/uploaded_file.txt
qiita_db/support_files/work_data/placeholder.txt
qiita_db/test/__init__.py
qiita_db/test/test_analysis.py
qiita_db/test/test_base.py
qiita_db/test/test_commands.py
qiita_db/test/test_data.py
qiita_db/test/test_job.py
qiita_db/test/test_logger.py
qiita_db/test/test_meta_util.py
qiita_db/test/test_metadata_template.py
qiita_db/test/test_ontology.py
qiita_db/test/test_parameters.py
qiita_db/test/test_reference.py
qiita_db/test/test_search.py
qiita_db/test/test_setup.py
qiita_db/test/test_sql_connection.py
qiita_db/test/test_study.py
qiita_db/test/test_user.py
qiita_db/test/test_util.py
qiita_db/test/test_data/sample_template.txt
qiita_pet/.webserver.py.swp
qiita_pet/__init__.py
qiita_pet/exceptions.py
qiita_pet/nginx_example.conf
qiita_pet/util.py
qiita_pet/webserver.py
qiita_pet/handlers/__init__.py
qiita_pet/handlers/analysis_handlers.py
qiita_pet/handlers/auth_handlers.py
qiita_pet/handlers/base_handlers.py
qiita_pet/handlers/compute.py
qiita_pet/handlers/download.py
qiita_pet/handlers/logger_handlers.py
qiita_pet/handlers/preprocessing_handlers.py
qiita_pet/handlers/stats.py
qiita_pet/handlers/study_handlers.py
qiita_pet/handlers/upload.py
qiita_pet/handlers/user_handlers.py
qiita_pet/handlers/websocket_handlers.py
qiita_pet/results/admin/jobname/placeholder.html
qiita_pet/static/css/style.css
qiita_pet/static/img/favicon.ico
qiita_pet/static/img/logo-clear.png
qiita_pet/static/img/logo.png
qiita_pet/static/img/waiting.gif
qiita_pet/static/js/analysis.js
qiita_pet/static/js/password_validation.js
qiita_pet/static/vendor/css/bootstrap-theme.min.css
qiita_pet/static/vendor/css/bootstrap.min.css
qiita_pet/static/vendor/css/chosen-sprite.png
qiita_pet/static/vendor/css/chosen-sprite@2x.png
qiita_pet/static/vendor/css/chosen.css
qiita_pet/static/vendor/css/jquery-ui.min.css
qiita_pet/static/vendor/css/jquery-ui.structure.min.css
qiita_pet/static/vendor/css/jquery-ui.theme.min.css
qiita_pet/static/vendor/css/jquery.dataTables.css
qiita_pet/static/vendor/css/jquery.qtip.min.css
qiita_pet/static/vendor/css/images/ui-bg_diagonals-thick_18_b81900_40x40.png
qiita_pet/static/vendor/css/images/ui-bg_diagonals-thick_20_666666_40x40.png
qiita_pet/static/vendor/css/images/ui-bg_flat_0_aaaaaa_40x100.png
qiita_pet/static/vendor/css/images/ui-bg_flat_10_000000_40x100.png
qiita_pet/static/vendor/css/images/ui-bg_flat_75_ffffff_40x100.png
qiita_pet/static/vendor/css/images/ui-bg_glass_100_f6f6f6_1x400.png
qiita_pet/static/vendor/css/images/ui-bg_glass_100_fdf5ce_1x400.png
qiita_pet/static/vendor/css/images/ui-bg_glass_55_fbf9ee_1x400.png
qiita_pet/static/vendor/css/images/ui-bg_glass_65_ffffff_1x400.png
qiita_pet/static/vendor/css/images/ui-bg_glass_75_dadada_1x400.png
qiita_pet/static/vendor/css/images/ui-bg_glass_75_e6e6e6_1x400.png
qiita_pet/static/vendor/css/images/ui-bg_glass_95_fef1ec_1x400.png
qiita_pet/static/vendor/css/images/ui-bg_gloss-wave_35_f6a828_500x100.png
qiita_pet/static/vendor/css/images/ui-bg_highlight-soft_100_eeeeee_1x100.png
qiita_pet/static/vendor/css/images/ui-bg_highlight-soft_75_cccccc_1x100.png
qiita_pet/static/vendor/css/images/ui-bg_highlight-soft_75_ffe45c_1x100.png
qiita_pet/static/vendor/css/images/ui-icons_222222_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_228ef1_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_2e83ff_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_454545_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_888888_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_cd0a0a_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_ef8c08_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_ffd27a_256x240.png
qiita_pet/static/vendor/css/images/ui-icons_ffffff_256x240.png
qiita_pet/static/vendor/fonts/glyphicons-halflings-regular.eot
qiita_pet/static/vendor/fonts/glyphicons-halflings-regular.svg
qiita_pet/static/vendor/fonts/glyphicons-halflings-regular.ttf
qiita_pet/static/vendor/fonts/glyphicons-halflings-regular.woff
qiita_pet/static/vendor/images/sort_asc.png
qiita_pet/static/vendor/images/sort_asc_disabled.png
qiita_pet/static/vendor/images/sort_both.png
qiita_pet/static/vendor/images/sort_desc.png
qiita_pet/static/vendor/images/sort_desc_disabled.png
qiita_pet/static/vendor/js/bootstrap.min.js
qiita_pet/static/vendor/js/chosen.jquery.min.js
qiita_pet/static/vendor/js/dropdown.min.js
qiita_pet/static/vendor/js/jquery-2.1.0.min.js
qiita_pet/static/vendor/js/jquery-ui.min.js
qiita_pet/static/vendor/js/jquery.dataTables.min.js
qiita_pet/static/vendor/js/jquery.qtip.min.js
qiita_pet/static/vendor/js/jquery.validate.min.js
qiita_pet/static/vendor/js/popover.min.js
qiita_pet/static/vendor/js/popover_edit.min.js
qiita_pet/static/vendor/js/resumable-uploader.js
qiita_pet/static/vendor/js/resumable.js
qiita_pet/static/vendor/js/string.min.js
qiita_pet/static/vendor/js/tooltip.min.js
qiita_pet/static/vendor/js/underscore.min.js
qiita_pet/static/vendor/licences/bootstrap_license.txt
qiita_pet/static/vendor/licences/datatables_license.txt
qiita_pet/static/vendor/licences/jquery_license.txt
qiita_pet/static/vendor/licences/underscore_license.txt
qiita_pet/templates/404.html
qiita_pet/templates/admin_approval.html
qiita_pet/templates/analysis_results.html
qiita_pet/templates/analysis_waiting.html
qiita_pet/templates/change_lost_pass.html
qiita_pet/templates/change_password.html
qiita_pet/templates/compute_wait.html
qiita_pet/templates/create_user.html
qiita_pet/templates/ebi_submission.html
qiita_pet/templates/edit_study.html
qiita_pet/templates/error.html
qiita_pet/templates/error_log.html
qiita_pet/templates/index.html
qiita_pet/templates/login.html
qiita_pet/templates/lost_pass.html
qiita_pet/templates/metadata_summary.html
qiita_pet/templates/private_studies.html
qiita_pet/templates/public_studies.html
qiita_pet/templates/search_studies.html
qiita_pet/templates/select_commands.html
qiita_pet/templates/show_analyses.html
qiita_pet/templates/sitebase.html
qiita_pet/templates/stats.html
qiita_pet/templates/study_description.html
qiita_pet/templates/text_file.html
qiita_pet/templates/upload.html
qiita_pet/templates/user_profile.html
qiita_pet/templates/user_verified.html
qiita_pet/templates/waiting.html
qiita_pet/test/__init__.py
qiita_pet/test/test_analysis_handlers.py
qiita_pet/test/test_auth_handlers.py
qiita_pet/test/test_base_handlers.py
qiita_pet/test/test_logger.py
qiita_pet/test/test_study_handlers.py
qiita_pet/test/test_upload.py
qiita_pet/test/test_user_handlers.py
qiita_pet/test/test_util.py
qiita_pet/test/tornado_test_base.py
qiita_spots.egg-info/PKG-INFO
qiita_spots.egg-info/SOURCES.txt
qiita_spots.egg-info/dependency_links.txt
qiita_spots.egg-info/requires.txt
qiita_spots.egg-info/top_level.txt
qiita_ware/__init__.py
qiita_ware/analysis_pipeline.py
qiita_ware/commands.py
qiita_ware/context.py
qiita_ware/demux.py
qiita_ware/dispatchable.py
qiita_ware/ebi.py
qiita_ware/exceptions.py
qiita_ware/processing_pipeline.py
qiita_ware/util.py
qiita_ware/wrapper.py
qiita_ware/test/__init__.py
qiita_ware/test/test_analysis_pipeline.py
qiita_ware/test/test_demux.py
qiita_ware/test/test_ebi.py
qiita_ware/test/test_processing_pipeline.py
qiita_ware/test/test_util.py
qiita_ware/test/test_data/__init__.py
qiita_ware/test/test_data/demux.fastq
qiita_ware/test/test_data/sample1.fastq
qiita_ware/test/test_data/sample2.fastq
qiita_ware/test/test_data/sample3.fastq
scripts/.qiita.swp
scripts/qiita
scripts/qiita_env