setup.cfg
setup.py
bin/ratatoskd
examples/__init__.py
ratatosk/__init__.py
ratatosk/backend.py
ratatosk/config.py
ratatosk/experiment.py
ratatosk/handler.py
ratatosk/interface.py
ratatosk/job.py
ratatosk/jobrunner.py
ratatosk/server.py
ratatosk/shell.py
ratatosk/utils.py
ratatosk.egg-info/PKG-INFO
ratatosk.egg-info/SOURCES.txt
ratatosk.egg-info/dependency_links.txt
ratatosk.egg-info/namespace_packages.txt
ratatosk.egg-info/requires.txt
ratatosk.egg-info/top_level.txt
ratatosk/ext/__init__.py
ratatosk/lib/__init__.py
ratatosk/lib/align/__init__.py
ratatosk/lib/align/bwa.py
ratatosk/lib/annotation/__init__.py
ratatosk/lib/annotation/annovar.py
ratatosk/lib/annotation/snpeff.py
ratatosk/lib/cancer/__init__.py
ratatosk/lib/cancer/mutect.py
ratatosk/lib/cancer/varscan.py
ratatosk/lib/files/__init__.py
ratatosk/lib/files/external.py
ratatosk/lib/files/fastq.py
ratatosk/lib/tools/__init__.py
ratatosk/lib/tools/fastqc.py
ratatosk/lib/tools/gatk.py
ratatosk/lib/tools/picard.py
ratatosk/lib/tools/samtools.py
ratatosk/lib/utils/__init__.py
ratatosk/lib/utils/bam.py
ratatosk/lib/utils/cutadapt.py
ratatosk/lib/utils/misc.py
ratatosk/lib/variation/__init__.py
ratatosk/lib/variation/htslib.py
ratatosk/lib/variation/tabix.py
ratatosk/lib/variation/vcftools.py
ratatosk/pipeline/__init__.py
ratatosk/pipeline/align.py
ratatosk/pipeline/haloplex.py
ratatosk/pipeline/seqcap.py
scripts/ratatosk_run.py
test/__init__.py
test/site_functions.py
test/test_commands.py
test/test_config.py
test/test_functions.py
test/test_handler.py
test/test_job.py
test/test_wrapper.py