LICENSE.txt
MANIFEST.in
README.markdown
commands.txt
setup.py
bin/rsd_blast
bin/rsd_format
bin/rsd_search
examples/Mycoplasma_genitalium.aa.ids.txt
examples/Mycoplasma_genitalium.aa_Mycobacterium_leprae.aa_0.2_1e-20.orthologs.txt
examples/Mycoplasma_genitalium.aa_Mycobacterium_leprae.aa_0.8_1e-5.orthologs.txt
examples/genomes/Mycobacterium_leprae.aa/Mycobacterium_leprae.aa
examples/genomes/Mycoplasma_genitalium.aa/Mycoplasma_genitalium.aa
reciprocal_smallest_distance.egg-info/PKG-INFO
reciprocal_smallest_distance.egg-info/SOURCES.txt
reciprocal_smallest_distance.egg-info/dependency_links.txt
reciprocal_smallest_distance.egg-info/requires.txt
reciprocal_smallest_distance.egg-info/top_level.txt
rsd/__init__.py
rsd/codeml.ctl
rsd/jones.dat
rsd/nested.py
rsd/orthutil.py
rsd/rsd.py
rsd/util.py
test/test_search.py