LICENSE.txt
MANIFEST.in
README.rst
distribute_setup.py
setup.py
bin/tapir_compare.py
bin/tapir_compute.py
bin/tapir_matplot.py
bin/tapir_plot.py
docs/accessing.rst
docs/citation.rst
docs/computing.rst
docs/funding.rst
docs/index.rst
docs/installation.rst
docs/introduction.rst
docs/license.rst
docs/plotting.rst
docs/references.rst
tapir/__init__.py
tapir/base.py
tapir/compute.py
tapir/db.py
tapir/rfunctions.py
tapir.egg-info/PKG-INFO
tapir.egg-info/SOURCES.txt
tapir.egg-info/dependency_links.txt
tapir.egg-info/requires.txt
tapir.egg-info/top_level.txt
tapir/data/models_and_rates.bf
tapir/data/scriptQueryTree.bf
tapir/tests/__init__.py
tapir/tests/run.py
tapir/tests/test_base.py
tapir/tests/test_compute.py
tapir/tests/test-data/Euteleost.tree
tapir/tests/test-data/chr1_918-test-cutoff-values.npy
tapir/tests/test-data/chr1_918.nex
tapir/tests/test-data/informativeness_cutoff.nex
tapir/tests/test-data/test-30-50-integral.npy
tapir/tests/test-data/test-R-townsend-output.npy
tapir/tests/test-data/test-culled-rates.npy
tapir/tests/test-data/test-extension.nexus
tapir/tests/test-data/test-parsed-rates.npy
tapir/tests/test-data/test-uniform-draw-weights.rates.json